RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 RPL11P62913 178 aaKnown RBP16.11■□□□□ 0.17
VPS28-205ENST00000526204 BLCAPP62952 87 aa16.11■□□□□ 0.17
VPS28-205ENST00000526204 SRSF1Q07955 248 aaKnown RBP eCLIP16.11■□□□□ 0.17
VPS28-205ENST00000526204 A6NDN8 102 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 MYOZ3Q8TDC0 251 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 TRAV26-2A0A0B4J265 109 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 C7orf71A4D174 169 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 K7EP13 123 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 IGKCP01834 107 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 ASIPP42127 132 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 FAM19A4Q96LR4 140 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 HHLA3Q9XRX5 114 aa16.1■□□□□ 0.17
VPS28-205ENST00000526204 MED14OSP0DP75 135 aa16.09■□□□□ 0.17
VPS28-205ENST00000526204 S100A4P26447 101 aaKnown RBP16.09■□□□□ 0.17
VPS28-205ENST00000526204 RHPN1-AS1Q9BWJ2 59 aa16.09■□□□□ 0.17
VPS28-205ENST00000526204 DAZ1Q9NQZ3 744 aaKnown RBP16.09■□□□□ 0.17
VPS28-205ENST00000526204 ABCA2Q9BZC7 2435 aa16.09■□□□□ 0.17
VPS28-205ENST00000526204 CFAP46Q8IYW2 2715 aa16.09■□□□□ 0.17
VPS28-205ENST00000526204 B4DSR2 109 aa16.09■□□□□ 0.17
VPS28-205ENST00000526204 ADAMTSL5Q6ZMM2 481 aa16.09■□□□□ 0.17
VPS28-205ENST00000526204 APRG1Q8IVJ8 170 aa16.09■□□□□ 0.17
VPS28-205ENST00000526204 FOXC2Q99958 501 aa16.09■□□□□ 0.17
VPS28-205ENST00000526204 J3KRW8 73 aa16.08■□□□□ 0.16
VPS28-205ENST00000526204 DPM2O94777 84 aa16.08■□□□□ 0.16
VPS28-205ENST00000526204 PCP2Q8IVA1 136 aa16.08■□□□□ 0.16
VPS28-205ENST00000526204 IGSF10Q6WRI0 2623 aa16.08■□□□□ 0.16
VPS28-205ENST00000526204 TMEM8BA6NDV4 472 aa16.07■□□□□ 0.16
VPS28-205ENST00000526204 GATA3P23771 443 aa16.07■□□□□ 0.16
VPS28-205ENST00000526204 TCTAP57738 103 aa16.07■□□□□ 0.16
VPS28-205ENST00000526204 ZNF580Q9UK33 172 aa16.07■□□□□ 0.16
VPS28-205ENST00000526204 AMMECR1LQ6DCA0 310 aa16.07■□□□□ 0.16
VPS28-205ENST00000526204 ERASQ7Z444 233 aa16.07■□□□□ 0.16
VPS28-205ENST00000526204 CBY1Q9Y3M2 126 aa16.07■□□□□ 0.16
VPS28-205ENST00000526204 K7EMT4 169 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 CFHR3Q02985 330 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 KIR3DS1Q14943 382 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 SAMD13Q5VXD3 122 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 SMIM2Q9BVW6 85 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 DPH3P1Q9H4G8 78 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 PHLDA3Q9Y5J5 127 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 H3BRM9 83 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 M0R381 172 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 DSCR9P59020 149 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 Q6ZS46 218 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 C20orf78Q9BR46 151 aa16.06■□□□□ 0.16
VPS28-205ENST00000526204 RNASE4P34096 147 aaKnown RBP16.05■□□□□ 0.16
VPS28-205ENST00000526204 ANXA2RQ3ZCQ2 193 aa16.05■□□□□ 0.16
VPS28-205ENST00000526204 TM4SF20Q53R12 229 aa16.05■□□□□ 0.16
VPS28-205ENST00000526204 K7EMI3 77 aa16.04■□□□□ 0.16
VPS28-205ENST00000526204 ORMDL2Q53FV1 153 aa16.04■□□□□ 0.16
VPS28-205ENST00000526204 HIGD1BQ9P298 99 aa16.04■□□□□ 0.16
VPS28-205ENST00000526204 TRAV8-6A0A0B4J262 113 aa16.03■□□□□ 0.16
VPS28-205ENST00000526204 HLA-DRB4P13762 266 aa16.03■□□□□ 0.16
VPS28-205ENST00000526204 ID1P41134 155 aa16.03■□□□□ 0.16
VPS28-205ENST00000526204 DEFB1P60022 68 aa16.03■□□□□ 0.16
VPS28-205ENST00000526204 LCNL1Q6ZST4 164 aa16.03■□□□□ 0.16
VPS28-205ENST00000526204 HLA-DRB4X5D2U9 266 aa16.03■□□□□ 0.16
VPS28-205ENST00000526204 COL12A1Q99715 3063 aa16.02■□□□□ 0.16
VPS28-205ENST00000526204 A0A087WX48 190 aa16.02■□□□□ 0.16
VPS28-205ENST00000526204 F6UB75 175 aa16.02■□□□□ 0.16
VPS28-205ENST00000526204 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.02■□□□□ 0.16
VPS28-205ENST00000526204 SUMO2P61956 95 aaKnown RBP16.02■□□□□ 0.16
VPS28-205ENST00000526204 AP1S3Q96PC3 154 aa16.02■□□□□ 0.16
VPS28-205ENST00000526204 IGKV3-7A0A075B6H7 116 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 IGKV2D-26A0A0A0MRZ7 120 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 PPP1R17O96001 155 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 AVPP01185 164 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 ZC2HC1BQ5TFG8 222 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 SPOCK3Q9BQ16 436 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 C9orf118A6NHY6 69 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 SLC25A16P16260 332 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 PLNP26678 52 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 C14orf178Q8N769 122 aaPredicted RBP16.01■□□□□ 0.15
VPS28-205ENST00000526204 RASL10AQ92737 203 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 TMEM160Q9NX00 188 aa16.01■□□□□ 0.15
VPS28-205ENST00000526204 MRPL35Q9NZE8 188 aaKnown RBP16.01■□□□□ 0.15
VPS28-205ENST00000526204 TRAV12-1A0A0B4J245 112 aa16■□□□□ 0.15
VPS28-205ENST00000526204 RNASE3P12724 160 aaKnown RBP15.99■□□□□ 0.15
VPS28-205ENST00000526204 PSMB8P28062 276 aa15.99■□□□□ 0.15
VPS28-205ENST00000526204 GTSCR1Q86UQ5 136 aa15.99■□□□□ 0.15
VPS28-205ENST00000526204 RNASE8Q8TDE3 154 aaKnown RBP15.99■□□□□ 0.15
VPS28-205ENST00000526204 KLLNB2CW77 178 aa15.98■□□□□ 0.15
VPS28-205ENST00000526204 GNRH2O43555 120 aa15.98■□□□□ 0.15
VPS28-205ENST00000526204 TOMM6Q96B49 74 aa15.98■□□□□ 0.15
VPS28-205ENST00000526204 USP24Q9UPU5 2620 aa15.98■□□□□ 0.15
VPS28-205ENST00000526204 TMEM89A2RUT3 159 aa15.98■□□□□ 0.15
VPS28-205ENST00000526204 NXPH4O95158 308 aa15.98■□□□□ 0.15
VPS28-205ENST00000526204 DCANP1Q8TF63 244 aa15.97■□□□□ 0.15
VPS28-205ENST00000526204 H7C1H1 209 aa15.97■□□□□ 0.15
VPS28-205ENST00000526204 MGPP08493 103 aa15.97■□□□□ 0.15
VPS28-205ENST00000526204 GTF2H5Q6ZYL4 71 aa15.97■□□□□ 0.15
VPS28-205ENST00000526204 POM121L12Q8N7R1 296 aa15.97■□□□□ 0.15
VPS28-205ENST00000526204 GAGE10A6NGK3 116 aa15.96■□□□□ 0.15
VPS28-205ENST00000526204 SCGB3A1Q96QR1 104 aa15.96■□□□□ 0.15
VPS28-205ENST00000526204 SPRY2O43597 315 aa15.95■□□□□ 0.14
VPS28-205ENST00000526204 SRD5A1P18405 259 aa15.95■□□□□ 0.14
VPS28-205ENST00000526204 FAM159AQ6UWV7 190 aa15.95■□□□□ 0.14
VPS28-205ENST00000526204 LINC01356Q8N9X3 169 aa15.95■□□□□ 0.14
VPS28-205ENST00000526204 CHAC1Q9BUX1 264 aa15.95■□□□□ 0.14
VPS28-205ENST00000526204 TRBV25-1A0A075B6N4 114 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms