RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 PPDPFLQ8WWR9 84 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 DPH3P1Q9H4G8 78 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 RP1L1Q8IWN7 2480 aaPredicted RBP13.54□□□□□ -0.24
NUP54-205ENST00000507257 MUC3AQ02505 3323 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 IGHV1-69DA0A0B4J2H0 117 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 RPL32P62910 135 aaKnown RBP13.54□□□□□ -0.24
NUP54-205ENST00000507257 C2orf66Q6UXQ4 117 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 TEN1Q86WV5 123 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 Q8N9W7 124 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 PRSS29PA6NIE9 313 aa13.53□□□□□ -0.24
NUP54-205ENST00000507257 H3BVH4 76 aa13.53□□□□□ -0.24
NUP54-205ENST00000507257 NFE4Q86UQ8 179 aa13.53□□□□□ -0.24
NUP54-205ENST00000507257 TIMD4Q96H15 378 aa13.53□□□□□ -0.24
NUP54-205ENST00000507257 CLUHP3Q96NS8 147 aa13.53□□□□□ -0.24
NUP54-205ENST00000507257 METTL26Q96S19 204 aa13.53□□□□□ -0.24
NUP54-205ENST00000507257 GEMIN7Q9H840 131 aaKnown RBP13.53□□□□□ -0.24
NUP54-205ENST00000507257 SMG1Q96Q15 3661 aaKnown RBP13.53□□□□□ -0.24
NUP54-205ENST00000507257 RNF223E7ERA6 249 aa13.52□□□□□ -0.24
NUP54-205ENST00000507257 CLEC3BP05452 202 aa13.52□□□□□ -0.24
NUP54-205ENST00000507257 POM121L12Q8N7R1 296 aa13.52□□□□□ -0.24
NUP54-205ENST00000507257 IGHV3OR16-8A0A075B7F1 116 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 M0QXV9 152 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 SPINK8P0C7L1 97 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 SCGB1D4Q6XE38 83 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 CFAP47Q6ZTR5 3102 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 Q6ZUT4 128 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 C9orf139Q6ZV77 190 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 DEFB123Q8N688 67 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 CCDC140Q96MF4 163 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 IGHV3-35A0A0C4DH35 117 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 HERVK_113P61574 105 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 SRSF9Q13242 221 aaKnown RBP eCLIP13.51□□□□□ -0.25
NUP54-205ENST00000507257 NDUFA11Q86Y39 141 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 ITLN2Q8WWU7 325 aaPredicted RBP13.51□□□□□ -0.25
NUP54-205ENST00000507257 LINC00477Q96M19 166 aa13.51□□□□□ -0.25
NUP54-205ENST00000507257 TRBV7-1A0A0A6YYK4 115 aa13.5□□□□□ -0.25
NUP54-205ENST00000507257 PSMB2P49721 201 aa13.5□□□□□ -0.25
NUP54-205ENST00000507257 VKORC1Q9BQB6 163 aa13.5□□□□□ -0.25
NUP54-205ENST00000507257 ZNF318Q5VUA4 2279 aa13.5□□□□□ -0.25
NUP54-205ENST00000507257 TRAV26-1A0A087WT03 109 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 TRAV21A0A0B4J279 112 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 A0A0J9YY99 117 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 Q8NA96 180 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 EEF1AKMT3Q96AZ1 226 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 PLEKHB2Q96CS7 222 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 SH3BGRL2Q9UJC5 107 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 PRR9Q5T870 116 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 KLK15Q9H2R5 256 aa13.49□□□□□ -0.25
NUP54-205ENST00000507257 CRYGDP07320 174 aa13.48□□□□□ -0.25
NUP54-205ENST00000507257 FHL3Q13643 280 aa13.48□□□□□ -0.25
NUP54-205ENST00000507257 ZFAND2AQ8N6M9 145 aa13.48□□□□□ -0.25
NUP54-205ENST00000507257 CARD19Q96LW7 228 aa13.48□□□□□ -0.25
NUP54-205ENST00000507257 LOC107984156A0A0G2JMH3 177 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 TMEM262E9PQX1 116 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 ASIPP42127 132 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 APRG1Q8IVJ8 170 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 ARL17AQ8IVW1 177 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 RPL39LQ96EH5 51 aaKnown RBP13.47□□□□□ -0.25
NUP54-205ENST00000507257 POLEQ07864 2286 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 IGLV4-69A0A075B6H9 119 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 IGHV4OR15-8A0A075B7B6 117 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 A0A087WW49 117 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 IGHV3-66A0A0C4DH42 116 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 TRBV7-9A0A0J9YWB2 115 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 NXPH4O95158 308 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 MT-ATP8P03928 68 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 FBXL19-AS1Q494R0 122 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 CLEC19AQ6UXS0 136 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 ZFP2Q6ZN57 461 aa13.47□□□□□ -0.25
NUP54-205ENST00000507257 A8MWV9 139 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 OVOL1O14753 267 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 ATP6V0E1O15342 81 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 XGP55808 180 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 Q6ZQT7 251 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 GPHB5Q86YW7 130 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 C10orf126Q8N4M7 172 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 SLC25A29Q8N8R3 303 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 GLMPQ8WWB7 406 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 TMEM141Q96I45 108 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 C16orf92Q96LL3 132 aa13.46□□□□□ -0.25
NUP54-205ENST00000507257 PCNX1Q96RV3 2341 aa13.46□□□□□ -0.26
NUP54-205ENST00000507257 KALRNO60229 2985 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 TCL1BO95988 128 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 IGHV3-30P01768 117 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 IGHV3-30-5P0DP03 117 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 ECSCRQ19T08 205 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 PHLDA3Q9Y5J5 127 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 IGIPA6NJ69 53 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 C11orf86A6NJI1 115 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 ZNF688P0C7X2 276 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 PMVKQ15126 192 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 C14orf178Q8N769 122 aaPredicted RBP13.45□□□□□ -0.26
NUP54-205ENST00000507257 FAM19A4Q96LR4 140 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 ERG28Q9UKR5 140 aa13.45□□□□□ -0.26
NUP54-205ENST00000507257 S100A4P26447 101 aaKnown RBP13.44□□□□□ -0.26
NUP54-205ENST00000507257 TIMM17AQ99595 171 aa13.44□□□□□ -0.26
NUP54-205ENST00000507257 ARHGAP32A7KAX9 2087 aa13.44□□□□□ -0.26
NUP54-205ENST00000507257 TPRP12270 2363 aaKnown RBP13.44□□□□□ -0.26
NUP54-205ENST00000507257 CEP250Q9BV73 2442 aa13.44□□□□□ -0.26
NUP54-205ENST00000507257 TSHBP01222 138 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms