RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 TEX46H3BTG2 121 aa11.22□□□□□ -0.61
LIME1-209ENST00000494776 SPINK4O60575 86 aa11.22□□□□□ -0.61
LIME1-209ENST00000494776 UBE2G1P62253 170 aa11.22□□□□□ -0.61
LIME1-209ENST00000494776 UBE2DNLQ8IWF7 75 aa11.22□□□□□ -0.61
LIME1-209ENST00000494776 KCNS1Q96KK3 526 aa11.22□□□□□ -0.61
LIME1-209ENST00000494776 TCEAL7Q9BRU2 100 aa11.22□□□□□ -0.61
LIME1-209ENST00000494776 SDF2L1Q9HCN8 221 aa11.22□□□□□ -0.61
LIME1-209ENST00000494776 MRPL16Q9NX20 251 aaKnown RBP11.22□□□□□ -0.61
LIME1-209ENST00000494776 MDFICQ9P1T7 246 aa11.22□□□□□ -0.61
LIME1-209ENST00000494776 A0A1B0GVG6 124 aa11.21□□□□□ -0.61
LIME1-209ENST00000494776 GNRH2O43555 120 aa11.21□□□□□ -0.61
LIME1-209ENST00000494776 NUDT3O95989 172 aa11.21□□□□□ -0.61
LIME1-209ENST00000494776 PFN1P07737 140 aaKnown RBP11.21□□□□□ -0.61
LIME1-209ENST00000494776 LGALS9BQ3B8N2 356 aa11.21□□□□□ -0.61
LIME1-209ENST00000494776 TDRG1Q3Y452 100 aa11.21□□□□□ -0.61
LIME1-209ENST00000494776 SPXQ9BT56 116 aa11.21□□□□□ -0.61
LIME1-209ENST00000494776 AKR1C3P42330 323 aa11.2□□□□□ -0.62
LIME1-209ENST00000494776 ZNF80P51504 273 aaPredicted RBP11.2□□□□□ -0.62
LIME1-209ENST00000494776 Q86TA4 180 aa11.2□□□□□ -0.62
LIME1-209ENST00000494776 C9orf62Q8N4C0 152 aa11.2□□□□□ -0.62
LIME1-209ENST00000494776 FMC1Q96HJ9 113 aa11.2□□□□□ -0.62
LIME1-209ENST00000494776 TRAV26-1A0A087WT03 109 aa11.19□□□□□ -0.62
LIME1-209ENST00000494776 TYMSP04818 313 aa11.19□□□□□ -0.62
LIME1-209ENST00000494776 SULT1A2P50226 295 aa11.19□□□□□ -0.62
LIME1-209ENST00000494776 POM121L12Q8N7R1 296 aa11.19□□□□□ -0.62
LIME1-209ENST00000494776 IGHV3-16A0A0C4DH30 117 aa11.18□□□□□ -0.62
LIME1-209ENST00000494776 A0A0J9YY99 117 aa11.18□□□□□ -0.62
LIME1-209ENST00000494776 IGHV3-53P01767 116 aa11.18□□□□□ -0.62
LIME1-209ENST00000494776 HOXA5P20719 270 aa11.18□□□□□ -0.62
LIME1-209ENST00000494776 C18orf15Q96N68 181 aa11.18□□□□□ -0.62
LIME1-209ENST00000494776 MANBALQ9NQG1 85 aa11.18□□□□□ -0.62
LIME1-209ENST00000494776 GNG13Q9P2W3 67 aa11.18□□□□□ -0.62
LIME1-209ENST00000494776 ZFP30Q9Y2G7 519 aa11.18□□□□□ -0.62
LIME1-209ENST00000494776 FABP5P3A8MUU1 101 aa11.17□□□□□ -0.62
LIME1-209ENST00000494776 EPPK1P58107 5090 aaKnown RBP11.17□□□□□ -0.62
LIME1-209ENST00000494776 BIRC6Q9NR09 4857 aa11.16□□□□□ -0.62
LIME1-209ENST00000494776 TRAV1-1A0A0B4J248 108 aa11.16□□□□□ -0.62
LIME1-209ENST00000494776 SCO2A0A1W2PP80 73 aa11.16□□□□□ -0.62
LIME1-209ENST00000494776 M0R2P5 195 aa11.16□□□□□ -0.62
LIME1-209ENST00000494776 S100A9P06702 114 aaKnown RBP11.16□□□□□ -0.62
LIME1-209ENST00000494776 CCL20P78556 96 aa11.16□□□□□ -0.62
LIME1-209ENST00000494776 C11orf21Q9P2W6 132 aa11.16□□□□□ -0.62
LIME1-209ENST00000494776 ORM1P02763 201 aa11.15□□□□□ -0.62
LIME1-209ENST00000494776 RNF212Q495C1 297 aa11.15□□□□□ -0.62
LIME1-209ENST00000494776 RASL10AQ92737 203 aa11.15□□□□□ -0.62
LIME1-209ENST00000494776 ZC2HC1AQ96GY0 325 aa11.15□□□□□ -0.62
LIME1-209ENST00000494776 TRGV4A0A0C4DH28 118 aa11.14□□□□□ -0.63
LIME1-209ENST00000494776 TRBV6-1A0A0K0K1D8 114 aa11.14□□□□□ -0.63
LIME1-209ENST00000494776 LTAP01374 205 aa11.14□□□□□ -0.63
LIME1-209ENST00000494776 IFNA1P01562 189 aa11.14□□□□□ -0.63
LIME1-209ENST00000494776 S100A4P26447 101 aaKnown RBP11.14□□□□□ -0.63
LIME1-209ENST00000494776 NKX2-5P52952 324 aaPredicted RBP11.14□□□□□ -0.63
LIME1-209ENST00000494776 CCL18P55774 89 aa11.14□□□□□ -0.63
LIME1-209ENST00000494776 FAM162BQ5T6X4 162 aa11.14□□□□□ -0.63
LIME1-209ENST00000494776 C9JCJ5 164 aa11.13□□□□□ -0.63
LIME1-209ENST00000494776 H3BNG1 76 aa11.13□□□□□ -0.63
LIME1-209ENST00000494776 PAX4O43316 350 aa11.13□□□□□ -0.63
LIME1-209ENST00000494776 SLAQ13239 276 aa11.13□□□□□ -0.63
LIME1-209ENST00000494776 B4DEV8 164 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 M0R036 132 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 SH2D1AO60880 128 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 SFTA3P0C7M3 94 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 ASIPP42127 132 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 ALKAL2Q6UX46 152 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 BAGE2Q86Y30 109 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 NHLRC2Q8NBF2 726 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 OR4C5Q8NGB2 326 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 TXNDC17Q9BRA2 123 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 PRO0255Q9UI72 69 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 HHLA3Q9XRX5 114 aa11.12□□□□□ -0.63
LIME1-209ENST00000494776 TRAV4A0A0B4J268 109 aa11.11□□□□□ -0.63
LIME1-209ENST00000494776 IGKV3D-20A0A0C4DH25 116 aa11.11□□□□□ -0.63
LIME1-209ENST00000494776 CRIP1P50238 77 aa11.11□□□□□ -0.63
LIME1-209ENST00000494776 FAM3BP58499 235 aaPredicted RBP11.11□□□□□ -0.63
LIME1-209ENST00000494776 ZNF876PQ49A33 203 aa11.11□□□□□ -0.63
LIME1-209ENST00000494776 COX8CQ7Z4L0 72 aa11.11□□□□□ -0.63
LIME1-209ENST00000494776 VSIG2Q96IQ7 327 aa11.11□□□□□ -0.63
LIME1-209ENST00000494776 ZNF479Q96JC4 524 aa11.11□□□□□ -0.63
LIME1-209ENST00000494776 IGLV2-18A0A075B6J9 118 aa11.1□□□□□ -0.63
LIME1-209ENST00000494776 M0R2N4 97 aa11.1□□□□□ -0.63
LIME1-209ENST00000494776 FHL2Q14192 279 aa11.1□□□□□ -0.63
LIME1-209ENST00000494776 ZNF674Q2M3X9 581 aa11.1□□□□□ -0.63
LIME1-209ENST00000494776 C9orf85Q96MD7 179 aa11.1□□□□□ -0.63
LIME1-209ENST00000494776 KRBOX1C9JBD0 128 aa11.09□□□□□ -0.63
LIME1-209ENST00000494776 PDE6DO43924 150 aa11.09□□□□□ -0.63
LIME1-209ENST00000494776 RNASE3P12724 160 aaKnown RBP11.09□□□□□ -0.63
LIME1-209ENST00000494776 RPL35P42766 123 aaKnown RBP11.09□□□□□ -0.63
LIME1-209ENST00000494776 CRYBA4P53673 196 aa11.09□□□□□ -0.63
LIME1-209ENST00000494776 BLOC1S1P78537 153 aa11.09□□□□□ -0.63
LIME1-209ENST00000494776 MEF2BQ02080 365 aaPredicted RBP11.09□□□□□ -0.63
LIME1-209ENST00000494776 BOLA1Q9Y3E2 137 aa11.09□□□□□ -0.63
LIME1-209ENST00000494776 ICOSQ9Y6W8 199 aa11.09□□□□□ -0.63
LIME1-209ENST00000494776 TMSB15BA0A087X1C1 80 aa11.08□□□□□ -0.64
LIME1-209ENST00000494776 BCL2P10415 239 aa11.08□□□□□ -0.64
LIME1-209ENST00000494776 TAGLN2P37802 199 aaKnown RBP11.08□□□□□ -0.64
LIME1-209ENST00000494776 PCNPQ8WW12 178 aaKnown RBP11.08□□□□□ -0.64
LIME1-209ENST00000494776 C11orf52Q96A22 123 aa11.08□□□□□ -0.64
LIME1-209ENST00000494776 VAX2Q9UIW0 290 aa11.08□□□□□ -0.64
LIME1-209ENST00000494776 LINC00588Q9Y4M8 146 aa11.08□□□□□ -0.64
LIME1-209ENST00000494776 A0A096LPF7 62 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms