RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 A0A1B0GV72 72 aa0□□□□□ -2.41
SMC4-223ENST00000493695 CDC42EP2O14613 210 aa0□□□□□ -2.41
SMC4-223ENST00000493695 UQCRQO14949 82 aa0□□□□□ -2.41
SMC4-223ENST00000493695 IGKCP01834 107 aa0□□□□□ -2.41
SMC4-223ENST00000493695 KLKP1Q107X0 134 aa0□□□□□ -2.41
SMC4-223ENST00000493695 JMJD1CQ15652 2540 aa0□□□□□ -2.41
SMC4-223ENST00000493695 TMEM128Q5BJH2 165 aa0□□□□□ -2.41
SMC4-223ENST00000493695 RBBP6Q7Z6E9 1792 aaKnown RBP0□□□□□ -2.41
SMC4-223ENST00000493695 OTOSQ8NHW6 89 aa0□□□□□ -2.41
SMC4-223ENST00000493695 RREB1Q92766 1687 aa0□□□□□ -2.41
SMC4-223ENST00000493695 CCDC115Q96NT0 180 aa0□□□□□ -2.41
SMC4-223ENST00000493695 DDA1Q9BW61 102 aa0□□□□□ -2.41
SMC4-223ENST00000493695 MED23Q9ULK4 1368 aa0□□□□□ -2.41
SMC4-223ENST00000493695 MYH1P12882 1939 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 LRP5O75197 1615 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 ZCCHC6Q5VYS8 1495 aaKnown RBP-0.01□□□□□ -2.41
SMC4-223ENST00000493695 POLQO75417 2590 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 M0QZK8 103 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 LSM3P62310 102 aaKnown RBP-0.01□□□□□ -2.41
SMC4-223ENST00000493695 OR4S1Q8NGB4 309 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 BRK1Q8WUW1 75 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 SMIM7Q9BQ49 75 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 V9GYQ6 96 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 OTOGQ6ZRI0 2925 aa-0.01□□□□□ -2.41
SMC4-223ENST00000493695 HRNRQ86YZ3 2850 aaPredicted RBP-0.01□□□□□ -2.41
SMC4-223ENST00000493695 IGSF10Q6WRI0 2623 aa-0.02□□□□□ -2.41
SMC4-223ENST00000493695 SLC25A5P05141 298 aaKnown RBP-0.02□□□□□ -2.41
SMC4-223ENST00000493695 IDO2Q6ZQW0 420 aa-0.02□□□□□ -2.41
SMC4-223ENST00000493695 SREK1IP1Q8N9Q2 155 aaPredicted RBP-0.02□□□□□ -2.41
SMC4-223ENST00000493695 TANC1Q9C0D5 1861 aa-0.02□□□□□ -2.41
SMC4-223ENST00000493695 ESPL1Q14674 2120 aa-0.02□□□□□ -2.41
SMC4-223ENST00000493695 ABCA12Q86UK0 2595 aa-0.02□□□□□ -2.41
SMC4-223ENST00000493695 TTC28Q96AY4 2481 aa-0.03□□□□□ -2.41
SMC4-223ENST00000493695 ARHGAP31Q2M1Z3 1444 aa-0.03□□□□□ -2.41
SMC4-223ENST00000493695 IFNA21P01568 189 aa-0.03□□□□□ -2.41
SMC4-223ENST00000493695 CKS2P33552 79 aa-0.03□□□□□ -2.41
SMC4-223ENST00000493695 RPS28P62857 69 aaKnown RBP-0.03□□□□□ -2.41
SMC4-223ENST00000493695 SAMD13Q5VXD3 122 aa-0.03□□□□□ -2.41
SMC4-223ENST00000493695 ATG5Q9H1Y0 275 aa-0.03□□□□□ -2.41
SMC4-223ENST00000493695 TMEM14BQ9NUH8 114 aa-0.03□□□□□ -2.41
SMC4-223ENST00000493695 ARAP1Q96P48 1450 aa-0.03□□□□□ -2.41
SMC4-223ENST00000493695 NINQ8N4C6 2090 aa-0.04□□□□□ -2.42
SMC4-223ENST00000493695 IGHV1-24A0A0C4DH33 117 aa-0.04□□□□□ -2.42
SMC4-223ENST00000493695 FXYD1O00168 92 aa-0.04□□□□□ -2.42
SMC4-223ENST00000493695 IL7P13232 177 aa-0.04□□□□□ -2.42
SMC4-223ENST00000493695 ADCYAP1P18509 176 aa-0.04□□□□□ -2.42
SMC4-223ENST00000493695 METTL1Q9UBP6 276 aaKnown RBP-0.04□□□□□ -2.42
SMC4-223ENST00000493695 XIRP1Q702N8 1843 aaKnown RBP-0.04□□□□□ -2.42
SMC4-223ENST00000493695 CACNA1HO95180 2353 aa-0.04□□□□□ -2.42
SMC4-223ENST00000493695 PNMA8CA0A1B0GUJ8 204 aa-0.05□□□□□ -2.42
SMC4-223ENST00000493695 TCRAP04437 139 aa-0.05□□□□□ -2.42
SMC4-223ENST00000493695 PROK2Q9HC23 129 aa-0.05□□□□□ -2.42
SMC4-223ENST00000493695 OVOS2A0A0G2JMS6 1433 aa-0.05□□□□□ -2.42
SMC4-223ENST00000493695 COL7A1Q02388 2944 aa-0.06□□□□□ -2.42
SMC4-223ENST00000493695 TRBV10-1A0A0K0K1A3 114 aa-0.06□□□□□ -2.42
SMC4-223ENST00000493695 CXorf51AA0A1B0GTR3 108 aa-0.06□□□□□ -2.42
SMC4-223ENST00000493695 CCKP06307 115 aa-0.06□□□□□ -2.42
SMC4-223ENST00000493695 MPC1LP0DKB6 136 aa-0.06□□□□□ -2.42
SMC4-223ENST00000493695 OR2H2O95918 312 aa-0.07□□□□□ -2.42
SMC4-223ENST00000493695 HSD17B12Q53GQ0 312 aa-0.07□□□□□ -2.42
SMC4-223ENST00000493695 TMEM35BQ8NCS4 154 aa-0.07□□□□□ -2.42
SMC4-223ENST00000493695 NDUFAF1Q9Y375 327 aa-0.07□□□□□ -2.42
SMC4-223ENST00000493695 NCOR2Q9Y618 2525 aa-0.07□□□□□ -2.42
SMC4-223ENST00000493695 PLXNA2O75051 1894 aa-0.07□□□□□ -2.42
SMC4-223ENST00000493695 TEX49A0A1B0GTD5 131 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 A0A1B0GX51 115 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 J3KT08 172 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 CD3DP04234 171 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 PCBD1P61457 104 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 VMO1Q7Z5L0 202 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 PPDPFLQ8WWR9 84 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 KDM5CP41229 1560 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 GPR98Q8WXG9 6306 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 CELSR2Q9HCU4 2923 aa-0.08□□□□□ -2.42
SMC4-223ENST00000493695 NBEAP1P0C6P0 100 aa-0.09□□□□□ -2.42
SMC4-223ENST00000493695 HIST1H1BP16401 226 aaKnown RBP-0.09□□□□□ -2.42
SMC4-223ENST00000493695 PSPHP78330 225 aa-0.09□□□□□ -2.42
SMC4-223ENST00000493695 PLGLB1Q02325 96 aa-0.09□□□□□ -2.42
SMC4-223ENST00000493695 IQCJQ1A5X6 159 aa-0.09□□□□□ -2.42
SMC4-223ENST00000493695 TMEM91Q6ZNR0 172 aa-0.09□□□□□ -2.42
SMC4-223ENST00000493695 SMIM15Q7Z3B0 74 aa-0.09□□□□□ -2.42
SMC4-223ENST00000493695 SKA2Q8WVK7 121 aaPredicted RBP-0.09□□□□□ -2.42
SMC4-223ENST00000493695 SPAG17Q6Q759 2223 aa-0.09□□□□□ -2.42
SMC4-223ENST00000493695 UHRF1BP1LA0JNW5 1464 aa-0.1□□□□□ -2.42
SMC4-223ENST00000493695 ZNF142P52746 1687 aaPredicted RBP-0.1□□□□□ -2.43
SMC4-223ENST00000493695 HELZP42694 1942 aaKnown RBP-0.1□□□□□ -2.43
SMC4-223ENST00000493695 TRAV2A0A0B4J234 112 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 DPM2O94777 84 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 PYYP10082 97 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 S100GP29377 79 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 SDC4P31431 198 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 POLR2JP52435 117 aaKnown RBP-0.1□□□□□ -2.43
SMC4-223ENST00000493695 UNQ5815/PRO19632Q6UWF5 114 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 DNAJC15Q9Y5T4 150 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 ABCA1O95477 2261 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 CELSR1Q9NYQ6 3014 aa-0.1□□□□□ -2.43
SMC4-223ENST00000493695 PTPRZ1P23471 2315 aaPredicted RBP-0.1□□□□□ -2.43
SMC4-223ENST00000493695 UNC79Q9P2D8 2635 aa-0.11□□□□□ -2.43
SMC4-223ENST00000493695 IGF2RP11717 2491 aa-0.11□□□□□ -2.43
SMC4-223ENST00000493695 TRAV36DV7A0A075B6V5 113 aa-0.11□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms