RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 IGKV2-40A0A087WW87 121 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 KLLNB2CW77 178 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 RTL8CO15255 209 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 OR7C2O60412 319 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 GAGE7O76087 117 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 IGKV2D-40P01614 121 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 GPX1P07203 203 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 OR10J4P0C629 311 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 GAGE12FP0CL80 117 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 GAGE12GP0CL81 117 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 GAGE12IP0CL82 117 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 CRISP2P16562 243 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 RPL12P30050 165 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 CCL18P55774 89 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 TAS2R45P59539 299 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 DAZ2Q13117 558 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 BTN1A1Q13410 526 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 KHDC3LQ587J8 217 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 SOHLH1Q5JUK2 328 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 FFAR4Q5NUL3 377 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 Q6ZR54 194 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 LYPD1Q8N2G4 141 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 LINC00612Q8N6U2 182 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 FXYD5Q96DB9 178 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 LINC00467Q9BRT7 94 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 AGPAT4-IT1Q9H0P7 198 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 MUC4Q99102 2169 aa4.75□□□□□ -1.65
CCDC88A-213ENST00000476903 HECTD4Q9Y4D8 3996 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 TRBV7-9A0A0J9YWB2 115 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 RBAKDNA6NC62 111 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 ZNF324O75467 553 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 RNASE4P34096 147 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 CSN1S1P47710 185 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 UBE2L3P68036 154 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 CD300CQ08708 224 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 OR5I1Q13606 314 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 ACOT6Q3I5F7 207 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 ANXA2RQ3ZCQ2 193 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 C1orf134Q5TEV5 83 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 EIF4E3Q8N5X7 224 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 C11orf72Q8NBR9 251 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 GNPNAT1Q96EK6 184 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 PHYHIPLQ96FC7 376 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 ZNF479Q96JC4 524 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 VGLL1Q99990 258 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 SMIM3Q9BZL3 60 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 Q9H3A6 140 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 ZNF492Q9P255 531 aa4.74□□□□□ -1.65
CCDC88A-213ENST00000476903 TRGV2A0A075B6R0 118 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 TRAV26-1A0A087WT03 109 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 A0A1B0GVY2 172 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 A0A1W2PPV4 95 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 H3BNG1 76 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 PFDN1O60925 122 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 PTTG1O95997 202 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 ZNF138P52744 262 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 TCL1AP56279 114 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 RANP62826 216 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 IBA57Q5T440 356 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 Q6ZTI0 123 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 ZFAND2AQ8N6M9 145 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 ZNRF2Q8NHG8 242 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 RXFP4Q8TDU9 374 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 GSN-AS1Q9NRJ2 163 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 LINC00588Q9Y4M8 146 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 ALG5Q9Y673 324 aa4.73□□□□□ -1.65
CCDC88A-213ENST00000476903 PKHD1P08F94 4074 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 IGHV1OR15-1A0A075B7D0 117 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 TRGV1A0A0A0MS02 117 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 A0A0J9YY99 117 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 NBDYA0A0U1RRE5 68 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 GAGE10A6NGK3 116 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 PCP4L1A6NKN8 68 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 K7EQM0 130 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 SLAQ13239 276 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 ZNF266Q14584 549 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 FAM74A1Q5RGS3 127 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 PRR9Q5T870 116 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 PQLC2Q6ZP29 291 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 SSX7Q7RTT5 188 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 Q8TAT8 98 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 CMTM2Q8TAZ6 248 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 C18orf15Q96N68 181 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 WFDC1Q9HC57 220 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 TP53TG3Q9ULZ0 132 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 KLF12Q9Y4X4 402 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 LENEPQ9Y5L5 61 aa4.72□□□□□ -1.65
CCDC88A-213ENST00000476903 TRGV11A0A075B6L2 103 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 SPINK4O60575 86 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 MBP02144 154 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 RAB2AP61019 212 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 ZNF415Q09FC8 603 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 OR10G4Q8NGN3 311 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 OR10G9Q8NGN4 311 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 OR10G7Q8NGN6 311 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 TMED6Q8WW62 240 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 HYLS1Q96M11 299 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 MED28Q9H204 178 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 OTORQ9NRC9 128 aa4.71□□□□□ -1.66
CCDC88A-213ENST00000476903 FAT2Q9NYQ8 4349 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms