RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 TREM1Q9NP99 234 aa15.04■□□□□ -0
LIME1-203ENST00000465591 GGTLC3B5MD39 225 aa15.03■□□□□ -0
LIME1-203ENST00000465591 UMAD1C9J7I0 102 aa15.03■□□□□ -0
LIME1-203ENST00000465591 GNRH2O43555 120 aa15.03■□□□□ -0
LIME1-203ENST00000465591 FHL2Q14192 279 aa15.03■□□□□ -0
LIME1-203ENST00000465591 TDRG1Q3Y452 100 aa15.03■□□□□ -0
LIME1-203ENST00000465591 SOHLH1Q5JUK2 328 aa15.03■□□□□ -0
LIME1-203ENST00000465591 SLC51BQ86UW2 128 aa15.03■□□□□ -0
LIME1-203ENST00000465591 C9orf62Q8N4C0 152 aa15.03■□□□□ -0
LIME1-203ENST00000465591 C5orf17Q8NAS9 161 aa15.03■□□□□ -0
LIME1-203ENST00000465591 TCRAP04437 139 aa15.02■□□□□ -0
LIME1-203ENST00000465591 UPK3BQ9BT76 320 aa15.02■□□□□ -0
LIME1-203ENST00000465591 MRPS16Q9Y3D3 137 aaKnown RBP15.02■□□□□ -0
LIME1-203ENST00000465591 TRGV11A0A075B6L2 103 aa15.01□□□□□ -0.01
LIME1-203ENST00000465591 CTXND1A0A1B0GTU2 59 aa15.01□□□□□ -0.01
LIME1-203ENST00000465591 CXorf1O96002 111 aa15.01□□□□□ -0.01
LIME1-203ENST00000465591 IGLV2-11P01706 119 aa15.01□□□□□ -0.01
LIME1-203ENST00000465591 SFTA3P0C7M3 94 aa15.01□□□□□ -0.01
LIME1-203ENST00000465591 ZNF80P51504 273 aaPredicted RBP15.01□□□□□ -0.01
LIME1-203ENST00000465591 SUMO1P63165 101 aaKnown RBP15.01□□□□□ -0.01
LIME1-203ENST00000465591 TNP2Q05952 138 aa15.01□□□□□ -0.01
LIME1-203ENST00000465591 C6orf223Q8N319 242 aa15.01□□□□□ -0.01
LIME1-203ENST00000465591 C8orf49Q96NF6 230 aa15.01□□□□□ -0.01
LIME1-203ENST00000465591 TRAV21A0A0B4J279 112 aa15□□□□□ -0.01
LIME1-203ENST00000465591 IGHV3-16A0A0C4DH30 117 aa15□□□□□ -0.01
LIME1-203ENST00000465591 PAX4O43316 350 aa15□□□□□ -0.01
LIME1-203ENST00000465591 TYMSP04818 313 aa15□□□□□ -0.01
LIME1-203ENST00000465591 CRYBA4P53673 196 aa15□□□□□ -0.01
LIME1-203ENST00000465591 RASL10AQ92737 203 aa15□□□□□ -0.01
LIME1-203ENST00000465591 ZNF479Q96JC4 524 aa15□□□□□ -0.01
LIME1-203ENST00000465591 TMEM167BQ9NRX6 74 aa15□□□□□ -0.01
LIME1-203ENST00000465591 C11orf21Q9P2W6 132 aa15□□□□□ -0.01
LIME1-203ENST00000465591 SPXQ9BT56 116 aa14.99□□□□□ -0.01
LIME1-203ENST00000465591 PRO0255Q9UI72 69 aa14.99□□□□□ -0.01
LIME1-203ENST00000465591 EPDR1Q9UM22 224 aa14.99□□□□□ -0.01
LIME1-203ENST00000465591 PSG8Q9UQ74 426 aa14.99□□□□□ -0.01
LIME1-203ENST00000465591 SERTM2A0A1B0GWG4 89 aa14.98□□□□□ -0.01
LIME1-203ENST00000465591 DPPA3Q6W0C5 159 aa14.98□□□□□ -0.01
LIME1-203ENST00000465591 IQCF2Q8IXL9 164 aa14.98□□□□□ -0.01
LIME1-203ENST00000465591 HHLA3Q9XRX5 114 aa14.98□□□□□ -0.01
LIME1-203ENST00000465591 ICOSQ9Y6W8 199 aa14.97□□□□□ -0.01
LIME1-203ENST00000465591 RAB5CP51148 216 aa14.96□□□□□ -0.01
LIME1-203ENST00000465591 NKX2-5P52952 324 aaPredicted RBP14.96□□□□□ -0.01
LIME1-203ENST00000465591 FGF8P55075 233 aaPredicted RBP14.96□□□□□ -0.01
LIME1-203ENST00000465591 FLI1Q01543 452 aaPredicted RBP14.96□□□□□ -0.01
LIME1-203ENST00000465591 FAM213BQ8TBF2 198 aa14.96□□□□□ -0.01
LIME1-203ENST00000465591 LINC00479Q96M42 142 aa14.96□□□□□ -0.01
LIME1-203ENST00000465591 NDFIP1Q9BT67 221 aa14.96□□□□□ -0.01
LIME1-203ENST00000465591 TRGV4A0A0C4DH28 118 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 A0A1W2PRE2 83 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 MAP1LC3B2A6NCE7 125 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 PRNTQ86SH4 94 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 ZNF575Q86XF7 245 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 CYB561D1Q8N8Q1 229 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 TMEM75Q8N9X5 138 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 MAP1LC3BQ9GZQ8 125 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 SDF2L1Q9HCN8 221 aa14.95□□□□□ -0.02
LIME1-203ENST00000465591 TRAV34A0A0B4J273 112 aa14.94□□□□□ -0.02
LIME1-203ENST00000465591 M0R2P5 195 aa14.94□□□□□ -0.02
LIME1-203ENST00000465591 GCGP01275 180 aa14.94□□□□□ -0.02
LIME1-203ENST00000465591 UBE2G2P60604 165 aa14.94□□□□□ -0.02
LIME1-203ENST00000465591 SLAQ13239 276 aa14.94□□□□□ -0.02
LIME1-203ENST00000465591 K7EQM0 130 aa14.93□□□□□ -0.02
LIME1-203ENST00000465591 KCNS1Q96KK3 526 aa14.93□□□□□ -0.02
LIME1-203ENST00000465591 TRAV4A0A0B4J268 109 aa14.92□□□□□ -0.02
LIME1-203ENST00000465591 FHITP49789 147 aa14.92□□□□□ -0.02
LIME1-203ENST00000465591 TTC32Q5I0X7 151 aa14.92□□□□□ -0.02
LIME1-203ENST00000465591 LYPD5Q6UWN5 251 aa14.92□□□□□ -0.02
LIME1-203ENST00000465591 SFT2D1Q8WV19 159 aa14.92□□□□□ -0.02
LIME1-203ENST00000465591 MBD3L1Q8WWY6 194 aa14.92□□□□□ -0.02
LIME1-203ENST00000465591 FAM74A7A6NL05 159 aa14.91□□□□□ -0.02
LIME1-203ENST00000465591 K7EQD1 137 aa14.91□□□□□ -0.02
LIME1-203ENST00000465591 NXPH4O95158 308 aa14.91□□□□□ -0.02
LIME1-203ENST00000465591 PFN1P07737 140 aaKnown RBP14.91□□□□□ -0.02
LIME1-203ENST00000465591 H2AFB1P0C5Y9 115 aa14.91□□□□□ -0.02
LIME1-203ENST00000465591 SULT1A2P50226 295 aa14.91□□□□□ -0.02
LIME1-203ENST00000465591 MRPL23Q16540 153 aaKnown RBP14.91□□□□□ -0.02
LIME1-203ENST00000465591 SMUG1Q53HV7 270 aa14.91□□□□□ -0.02
LIME1-203ENST00000465591 A0A1W2PPQ1 181 aa14.9□□□□□ -0.02
LIME1-203ENST00000465591 GYPEP15421 78 aa14.9□□□□□ -0.02
LIME1-203ENST00000465591 OR4C5Q8NGB2 326 aa14.9□□□□□ -0.02
LIME1-203ENST00000465591 LRP1BQ9NZR2 4599 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 RYR1P21817 5038 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 LOC100131303A0A0U1RQF7 123 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 TEX46H3BTG2 121 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 PEX7O00628 323 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 SIVA1O15304 175 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 IFNA7P01567 189 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 NEGR1Q7Z3B1 354 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 C9orf85Q96MD7 179 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 NKX6-2Q9C056 277 aaPredicted RBP14.89□□□□□ -0.03
LIME1-203ENST00000465591 BOLA1Q9Y3E2 137 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 ARL2-SNX15V9GYD0 113 aa14.89□□□□□ -0.03
LIME1-203ENST00000465591 C9JCJ5 164 aa14.88□□□□□ -0.03
LIME1-203ENST00000465591 MED14OSP0DP75 135 aa14.88□□□□□ -0.03
LIME1-203ENST00000465591 FBLL1A6NHQ2 334 aaKnown RBP14.87□□□□□ -0.03
LIME1-203ENST00000465591 RNASE3P12724 160 aaKnown RBP14.87□□□□□ -0.03
LIME1-203ENST00000465591 SAPCD1Q5SSQ6 148 aa14.87□□□□□ -0.03
LIME1-203ENST00000465591 Q86TA4 180 aa14.87□□□□□ -0.03
LIME1-203ENST00000465591 KRTAP17-1Q9BYP8 105 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms