RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ZFAND2AQ8N6M9 145 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 OR10D4PQ8NGN7 298 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 RNASE8Q8TDE3 154 aaKnown RBP8.49□□□□□ -1.05
VPS52-213ENST00000461743 MAP1LC3BQ9GZQ8 125 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 DNAH6Q9C0G6 4158 aa8.48□□□□□ -1.05
VPS52-213ENST00000461743 LCE6AA0A183 80 aa8.48□□□□□ -1.05
VPS52-213ENST00000461743 ZNF705GA8MUZ8 300 aaPredicted RBP8.48□□□□□ -1.05
VPS52-213ENST00000461743 GPX1P07203 203 aa8.48□□□□□ -1.05
VPS52-213ENST00000461743 PRB4P10163 310 aaPredicted RBP8.48□□□□□ -1.05
VPS52-213ENST00000461743 C12orf74Q32Q52 190 aa8.48□□□□□ -1.05
VPS52-213ENST00000461743 FAM222AQ5U5X8 452 aa8.48□□□□□ -1.05
VPS52-213ENST00000461743 Q6ZTC4 211 aa8.48□□□□□ -1.05
VPS52-213ENST00000461743 TRAV12-3A0A0B4J271 114 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 B4DEV8 164 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 GGTLC3B5MD39 225 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 TCRAP04437 139 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 EMP1P54849 157 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 KIR3DS1Q14943 382 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 GOLT1AQ6ZVE7 132 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 CYB561D1Q8N8Q1 229 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 TMEM75Q8N9X5 138 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 Q8TAT8 98 aa8.47□□□□□ -1.05
VPS52-213ENST00000461743 PLAC8L1A1L4L8 177 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 J3KRW8 73 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BKO60814 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 ZNF324O75467 553 aaPredicted RBP8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BJP06899 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 RAB4AP20338 218 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BOP23527 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BBP33778 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 FHITP49789 147 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BDP58876 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 DAD1P61803 113 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BCP62807 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 ELOBQ15370 118 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST2H2BEQ16778 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 ANXA2RQ3ZCQ2 193 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.46□□□□□ -1.06
VPS52-213ENST00000461743 Q6AWC8 147 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BHQ93079 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 FAM210BQ96KR6 192 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BNQ99877 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 HIST1H2BMQ99879 126 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 ATG101Q9BSB4 218 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 NDFIP1Q9BT67 221 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 RPH3ALQ9UNE2 315 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 TIMM8BQ9Y5J9 83 aaPredicted RBP8.46□□□□□ -1.06
VPS52-213ENST00000461743 RYR2Q92736 4967 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 RYR3Q15413 4870 aa8.46□□□□□ -1.06
VPS52-213ENST00000461743 VPS13DQ5THJ4 4388 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 DEFB131BA0A096LNP1 70 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 RBFOX3A6NFN3 312 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 SNURFLB1AK76 121 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 RNASE4P34096 147 aaKnown RBP8.45□□□□□ -1.06
VPS52-213ENST00000461743 TAGLN2P37802 199 aaKnown RBP8.45□□□□□ -1.06
VPS52-213ENST00000461743 GNG5P63218 68 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 ZNF506Q5JVG8 444 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 IBA57Q5T440 356 aaKnown RBP8.45□□□□□ -1.06
VPS52-213ENST00000461743 PRR9Q5T870 116 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 CDPF1Q6NVV7 123 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 MBD3L1Q8WWY6 194 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 TVP23CQ96ET8 276 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 EPDR1Q9UM22 224 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 MUC4Q99102 2169 aa8.45□□□□□ -1.06
VPS52-213ENST00000461743 TCAPO15273 167 aa8.44□□□□□ -1.06
VPS52-213ENST00000461743 SRP19P09132 144 aaKnown RBP8.44□□□□□ -1.06
VPS52-213ENST00000461743 HTN1P15515 57 aa8.44□□□□□ -1.06
VPS52-213ENST00000461743 AZU1P20160 251 aa8.44□□□□□ -1.06
VPS52-213ENST00000461743 FGF8P55075 233 aaPredicted RBP8.44□□□□□ -1.06
VPS52-213ENST00000461743 SUMO1P63165 101 aaKnown RBP8.44□□□□□ -1.06
VPS52-213ENST00000461743 DAZ2Q13117 558 aaKnown RBP8.44□□□□□ -1.06
VPS52-213ENST00000461743 FAM213BQ8TBF2 198 aa8.44□□□□□ -1.06
VPS52-213ENST00000461743 LINC00476Q8WZB0 136 aa8.44□□□□□ -1.06
VPS52-213ENST00000461743 NDUFAF3Q9BU61 184 aa8.44□□□□□ -1.06
VPS52-213ENST00000461743 IGHV1OR15-1A0A075B7D0 117 aa8.43□□□□□ -1.06
VPS52-213ENST00000461743 CBY3A6NI87 242 aa8.43□□□□□ -1.06
VPS52-213ENST00000461743 PEX7O00628 323 aa8.43□□□□□ -1.06
VPS52-213ENST00000461743 CXCL1P09341 107 aa8.43□□□□□ -1.06
VPS52-213ENST00000461743 PNRC1Q12796 327 aaPredicted RBP8.43□□□□□ -1.06
VPS52-213ENST00000461743 JOSD1Q15040 202 aaPredicted RBP8.43□□□□□ -1.06
VPS52-213ENST00000461743 MRPL52Q86TS9 123 aaKnown RBP8.43□□□□□ -1.06
VPS52-213ENST00000461743 LINC00612Q8N6U2 182 aa8.43□□□□□ -1.06
VPS52-213ENST00000461743 PACRGQ96M98 296 aaPredicted RBP8.43□□□□□ -1.06
VPS52-213ENST00000461743 TMEM242Q9NWH2 141 aa8.43□□□□□ -1.06
VPS52-213ENST00000461743 KMT2AQ03164 3969 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 TRGV11A0A075B6L2 103 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 IGHV4-4A0A075B6R2 117 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 TRAV8-1A0A0A6YYK1 113 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 TRAV21A0A0B4J279 112 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 F6UZH7 168 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 PRM2P04554 102 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 TCL1AP56279 114 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 UBE2G2P60604 165 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 ZNF415Q09FC8 603 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 TDRG1Q3Y452 100 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 C11orf72Q8NBR9 251 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 NOP10Q9NPE3 64 aaKnown RBP8.42□□□□□ -1.06
VPS52-213ENST00000461743 PSG8Q9UQ74 426 aa8.42□□□□□ -1.06
VPS52-213ENST00000461743 TRBV24-1A0A075B6N3 115 aa8.41□□□□□ -1.06
VPS52-213ENST00000461743 TGIF2-C20orf24A0A0A6YYL0 155 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms