RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ITPR1Q14643 2758 aa15.76■□□□□ 0.11
CLK3-202ENST00000395066 TRAV40A0A0B4J280 105 aa15.76■□□□□ 0.11
CLK3-202ENST00000395066 K7EMI3 77 aa15.76■□□□□ 0.11
CLK3-202ENST00000395066 NPFFO15130 113 aa15.76■□□□□ 0.11
CLK3-202ENST00000395066 TRBV12-3P01733 135 aa15.76■□□□□ 0.11
CLK3-202ENST00000395066 HLA-DRB4P13762 266 aa15.76■□□□□ 0.11
CLK3-202ENST00000395066 BRD3OSQ6XYD6 125 aa15.76■□□□□ 0.11
CLK3-202ENST00000395066 HLA-DRB4X5D2U9 266 aa15.76■□□□□ 0.11
CLK3-202ENST00000395066 H3BVH4 76 aa15.75■□□□□ 0.11
CLK3-202ENST00000395066 C5orf56Q8N8D9 126 aa15.75■□□□□ 0.11
CLK3-202ENST00000395066 C20orf173Q96LM9 149 aa15.75■□□□□ 0.11
CLK3-202ENST00000395066 RBAKDNA6NC62 111 aa15.75■□□□□ 0.11
CLK3-202ENST00000395066 MRPL35Q9NZE8 188 aaKnown RBP15.75■□□□□ 0.11
CLK3-202ENST00000395066 SRSF1Q07955 248 aaKnown RBP eCLIP15.74■□□□□ 0.11
CLK3-202ENST00000395066 C16orf92Q96LL3 132 aa15.74■□□□□ 0.11
CLK3-202ENST00000395066 RAB9AP51151 201 aa15.73■□□□□ 0.11
CLK3-202ENST00000395066 UNQ9165/PRO28630Q6UXU0 137 aa15.73■□□□□ 0.11
CLK3-202ENST00000395066 MYOZ3Q8TDC0 251 aa15.73■□□□□ 0.11
CLK3-202ENST00000395066 EFNA4P52798 201 aa15.73■□□□□ 0.11
CLK3-202ENST00000395066 ATP5G2Q06055 141 aa15.73■□□□□ 0.11
CLK3-202ENST00000395066 SPANXN1Q5VSR9 72 aa15.73■□□□□ 0.11
CLK3-202ENST00000395066 MAPKAPK5-AS1Q8N8E1 139 aa15.73■□□□□ 0.11
CLK3-202ENST00000395066 IGKV3-7A0A075B6H7 116 aa15.72■□□□□ 0.11
CLK3-202ENST00000395066 C19orf84I3L1E1 186 aa15.72■□□□□ 0.11
CLK3-202ENST00000395066 NRACQ8N912 160 aa15.72■□□□□ 0.11
CLK3-202ENST00000395066 SPG11Q96JI7 2443 aa15.72■□□□□ 0.11
CLK3-202ENST00000395066 CELSR2Q9HCU4 2923 aa15.72■□□□□ 0.11
CLK3-202ENST00000395066 E9PLD3 99 aa15.72■□□□□ 0.11
CLK3-202ENST00000395066 LAGE3Q14657 143 aa15.72■□□□□ 0.11
CLK3-202ENST00000395066 TRBV7-1A0A0A6YYK4 115 aa15.71■□□□□ 0.11
CLK3-202ENST00000395066 IGLL5B9A064 214 aa15.71■□□□□ 0.11
CLK3-202ENST00000395066 TRAV41A0A0B4J266 112 aa15.7■□□□□ 0.1
CLK3-202ENST00000395066 PRSS47A8MTI9 375 aa15.7■□□□□ 0.1
CLK3-202ENST00000395066 SAMD13Q5VXD3 122 aa15.7■□□□□ 0.1
CLK3-202ENST00000395066 LCNL1Q6ZST4 164 aa15.7■□□□□ 0.1
CLK3-202ENST00000395066 KLK15Q9H2R5 256 aa15.7■□□□□ 0.1
CLK3-202ENST00000395066 A0A087WX48 190 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 IGHV3-11P01762 117 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 TAL2Q16559 108 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 FOXI2Q6ZQN5 318 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 C9orf47Q6ZRZ4 202 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 CRYBG3Q68DQ2 2970 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 M0R381 172 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 LY6EQ16553 131 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 ZNF479Q96JC4 524 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 U3KQE9 123 aa15.69■□□□□ 0.1
CLK3-202ENST00000395066 CSMD2Q7Z408 3487 aa15.68■□□□□ 0.1
CLK3-202ENST00000395066 GLMPQ8WWB7 406 aa15.68■□□□□ 0.1
CLK3-202ENST00000395066 F6UB75 175 aa15.68■□□□□ 0.1
CLK3-202ENST00000395066 F8W1H4 67 aa15.68■□□□□ 0.1
CLK3-202ENST00000395066 GPHB5Q86YW7 130 aa15.68■□□□□ 0.1
CLK3-202ENST00000395066 ARL3P36405 182 aa15.67■□□□□ 0.1
CLK3-202ENST00000395066 WFDC2Q14508 124 aa15.67■□□□□ 0.1
CLK3-202ENST00000395066 KLK9Q2XQG4 91 aa15.67■□□□□ 0.1
CLK3-202ENST00000395066 C12orf74Q32Q52 190 aa15.67■□□□□ 0.1
CLK3-202ENST00000395066 KLK9Q9UKQ9 250 aa15.67■□□□□ 0.1
CLK3-202ENST00000395066 PLNP26678 52 aa15.67■□□□□ 0.1
CLK3-202ENST00000395066 UCNP55089 124 aa15.67■□□□□ 0.1
CLK3-202ENST00000395066 HIST1H4GQ99525 98 aa15.66■□□□□ 0.1
CLK3-202ENST00000395066 SPANXB1Q9NS25 103 aaPredicted RBP15.66■□□□□ 0.1
CLK3-202ENST00000395066 RPL11P62913 178 aaKnown RBP15.66■□□□□ 0.1
CLK3-202ENST00000395066 DEFB104AQ8WTQ1 72 aa15.66■□□□□ 0.1
CLK3-202ENST00000395066 GTSF1LQ9H1H1 148 aa15.65■□□□□ 0.1
CLK3-202ENST00000395066 MOB4Q9Y3A3 225 aa15.65■□□□□ 0.1
CLK3-202ENST00000395066 AGRNO00468 2067 aa15.65■□□□□ 0.1
CLK3-202ENST00000395066 H3BMG7 143 aa15.64■□□□□ 0.1
CLK3-202ENST00000395066 AZU1P20160 251 aa15.64■□□□□ 0.1
CLK3-202ENST00000395066 RPL39LQ96EH5 51 aaKnown RBP15.64■□□□□ 0.1
CLK3-202ENST00000395066 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.64■□□□□ 0.09
CLK3-202ENST00000395066 IGHV4-39P01824 125 aa15.64■□□□□ 0.09
CLK3-202ENST00000395066 ITLN2Q8WWU7 325 aaPredicted RBP15.64■□□□□ 0.09
CLK3-202ENST00000395066 SIGMAR1Q99720 223 aa15.64■□□□□ 0.09
CLK3-202ENST00000395066 SRD5A1P18405 259 aa15.64■□□□□ 0.09
CLK3-202ENST00000395066 Q6ZS46 218 aa15.64■□□□□ 0.09
CLK3-202ENST00000395066 HIF1ANQ9NWT6 349 aa15.64■□□□□ 0.09
CLK3-202ENST00000395066 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.63■□□□□ 0.096e-7■■■□□ 16.8
CLK3-202ENST00000395066 ZFAND2AQ8N6M9 145 aa15.63■□□□□ 0.09
CLK3-202ENST00000395066 C14orf178Q8N769 122 aaPredicted RBP15.63■□□□□ 0.09
CLK3-202ENST00000395066 MRPL53Q96EL3 112 aaKnown RBP15.63■□□□□ 0.09
CLK3-202ENST00000395066 TSSC4Q9Y5U2 329 aaPredicted RBP15.63■□□□□ 0.09
CLK3-202ENST00000395066 IGHV4-4A0A075B6R2 117 aa15.63■□□□□ 0.09
CLK3-202ENST00000395066 EDN2P20800 178 aa15.63■□□□□ 0.09
CLK3-202ENST00000395066 CD300EQ496F6 205 aaPredicted RBP15.63■□□□□ 0.09
CLK3-202ENST00000395066 F8VRH5 84 aa15.62■□□□□ 0.09
CLK3-202ENST00000395066 H7C1H1 209 aa15.62■□□□□ 0.09
CLK3-202ENST00000395066 J3QR89 54 aa15.62■□□□□ 0.09
CLK3-202ENST00000395066 IGHV4-38-2P0DP08 117 aa15.62■□□□□ 0.09
CLK3-202ENST00000395066 C19orf54Q5BKX5 351 aa15.62■□□□□ 0.09
CLK3-202ENST00000395066 TRBV7-3A0A075B6L6 115 aa15.62■□□□□ 0.09
CLK3-202ENST00000395066 AMTNQ6UX39 209 aa15.62■□□□□ 0.09
CLK3-202ENST00000395066 WFDC12Q8WWY7 111 aa15.62■□□□□ 0.09
CLK3-202ENST00000395066 TRAV12-1A0A0B4J245 112 aa15.61■□□□□ 0.09
CLK3-202ENST00000395066 GAGE12HA6NDE8 117 aa15.61■□□□□ 0.09
CLK3-202ENST00000395066 CIDEAO60543 219 aa15.61■□□□□ 0.09
CLK3-202ENST00000395066 RNASE4P34096 147 aaKnown RBP15.61■□□□□ 0.09
CLK3-202ENST00000395066 C9orf139Q6ZV77 190 aa15.61■□□□□ 0.09
CLK3-202ENST00000395066 SMIM2Q9BVW6 85 aa15.61■□□□□ 0.09
CLK3-202ENST00000395066 CHTOPQ9Y3Y2 248 aaKnown RBP15.61■□□□□ 0.09
CLK3-202ENST00000395066 GNRH2O43555 120 aa15.61■□□□□ 0.09
CLK3-202ENST00000395066 SCGB1A1P11684 91 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms