RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 SMPXQ9UHP9 88 aa12.52□□□□□ -0.4
PCDH1-203ENST00000394536 OOSP1A8MZH6 123 aa12.52□□□□□ -0.41
PCDH1-203ENST00000394536 ZFP36P26651 326 aaKnown RBP12.52□□□□□ -0.41
PCDH1-203ENST00000394536 PAX2Q02962 417 aa12.52□□□□□ -0.41
PCDH1-203ENST00000394536 ADAMTSL5Q6ZMM2 481 aa12.52□□□□□ -0.41
PCDH1-203ENST00000394536 FAM110DQ8TAY7 271 aaPredicted RBP12.52□□□□□ -0.41
PCDH1-203ENST00000394536 TRBV25-1A0A075B6N4 114 aa12.52□□□□□ -0.41
PCDH1-203ENST00000394536 A0A087WWL8 130 aa12.52□□□□□ -0.41
PCDH1-203ENST00000394536 LINC01548A6NM66 108 aa12.52□□□□□ -0.41
PCDH1-203ENST00000394536 NPFFO15130 113 aa12.52□□□□□ -0.41
PCDH1-203ENST00000394536 BOD1L2Q8IYS8 172 aa12.52□□□□□ -0.41
PCDH1-203ENST00000394536 IGHV3-64A0A075B6Q5 118 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 BUB3O43684 328 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 ATP5J2P56134 94 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 NPBQ8NG41 125 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 BEX4Q9NWD9 120 aaPredicted RBP12.51□□□□□ -0.41
PCDH1-203ENST00000394536 NAV2Q8IVL1 2488 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 CIDEAO60543 219 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 MRGPRG-AS1Q2M3A8 158 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 ORMDL2Q53FV1 153 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 DPF1Q92782 380 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 H3BMG7 143 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 ID1P41134 155 aa12.51□□□□□ -0.41
PCDH1-203ENST00000394536 CSTL1Q9H114 145 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 NPFFR1Q9GZQ6 430 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 ATMQ13315 3056 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 H7C1H1 209 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 HOXA3O43365 443 aaPredicted RBP12.5□□□□□ -0.41
PCDH1-203ENST00000394536 UCNP55089 124 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 TCF15Q12870 199 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 SAMD13Q5VXD3 122 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 C2orf91Q6ZV80 131 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 Q8N9W7 124 aa12.5□□□□□ -0.41
PCDH1-203ENST00000394536 PSMG4Q5JS54 123 aa12.49□□□□□ -0.41
PCDH1-203ENST00000394536 IGF2-ASQ6U949 168 aa12.49□□□□□ -0.41
PCDH1-203ENST00000394536 ZFYVE26Q68DK2 2539 aa12.49□□□□□ -0.41
PCDH1-203ENST00000394536 GAGE13Q4V321 117 aa12.49□□□□□ -0.41
PCDH1-203ENST00000394536 ZNF493Q6ZR52 646 aa12.49□□□□□ -0.41
PCDH1-203ENST00000394536 TRAV12-3A0A0B4J271 114 aa12.49□□□□□ -0.41
PCDH1-203ENST00000394536 H3BUX3 64 aa12.49□□□□□ -0.41
PCDH1-203ENST00000394536 TNFRSF13BO14836 293 aaPredicted RBP12.49□□□□□ -0.41
PCDH1-203ENST00000394536 SUMO2P61956 95 aaKnown RBP12.49□□□□□ -0.41
PCDH1-203ENST00000394536 IGKV2D-26A0A0A0MRZ7 120 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 TRBV7-1A0A0A6YYK4 115 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 ZNF688P0C7X2 276 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 UBE2E1P51965 193 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 OVOL3O00110 214 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 HOXB4P17483 251 aaPredicted RBP12.48□□□□□ -0.41
PCDH1-203ENST00000394536 C2orf66Q6UXQ4 117 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 DCHS1Q96JQ0 3298 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 ZNF292O60281 2723 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 LGALS3P17931 250 aaKnown RBP12.48□□□□□ -0.41
PCDH1-203ENST00000394536 ANXA2RQ3ZCQ2 193 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 DPH3P1Q9H4G8 78 aa12.48□□□□□ -0.41
PCDH1-203ENST00000394536 PLNP26678 52 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 C9orf139Q6ZV77 190 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 AKAP13Q12802 2813 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 GNRH2O43555 120 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 ODF1Q14990 250 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 TMEM190Q8WZ59 177 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 RHPN1-AS1Q9BWJ2 59 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 PGPEP1Q9NXJ5 209 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 MOB4Q9Y3A3 225 aa12.47□□□□□ -0.41
PCDH1-203ENST00000394536 TEX48A0A1B0GUV7 120 aa12.46□□□□□ -0.41
PCDH1-203ENST00000394536 LY6LH3BQJ8 138 aa12.46□□□□□ -0.41
PCDH1-203ENST00000394536 RPL39LQ96EH5 51 aaKnown RBP12.46□□□□□ -0.41
PCDH1-203ENST00000394536 SMAD5-AS1Q9Y6J3 95 aa12.46□□□□□ -0.41
PCDH1-203ENST00000394536 IGKV3D-20A0A0C4DH25 116 aa12.46□□□□□ -0.42
PCDH1-203ENST00000394536 TRBV6-1A0A0K0K1D8 114 aa12.46□□□□□ -0.42
PCDH1-203ENST00000394536 LYRM7Q5U5X0 104 aa12.46□□□□□ -0.42
PCDH1-203ENST00000394536 SMIM2Q9BVW6 85 aa12.46□□□□□ -0.42
PCDH1-203ENST00000394536 SLC25A16P16260 332 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 SH2D6Q7Z4S9 175 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 SIGMAR1Q99720 223 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 MSRB2Q9Y3D2 182 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 CENPEQ02224 2701 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 DGAT2L7PQ6IED9 249 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 LINC00477Q96M19 166 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 OVOL1O14753 267 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 Q6ZQT7 251 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 CEND1Q8N111 149 aa12.45□□□□□ -0.42
PCDH1-203ENST00000394536 SIVA1O15304 175 aa12.44□□□□□ -0.42
PCDH1-203ENST00000394536 IGF1P05019 195 aa12.44□□□□□ -0.42
PCDH1-203ENST00000394536 DUX5Q96PT3 197 aa12.44□□□□□ -0.42
PCDH1-203ENST00000394536 ABCA2Q9BZC7 2435 aa12.44□□□□□ -0.42
PCDH1-203ENST00000394536 PIMREGQ9BSJ6 248 aa12.44□□□□□ -0.42
PCDH1-203ENST00000394536 IGHV3-73A0A0B4J1V6 119 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 F8VRH5 84 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 IGLC6P0CF74 106 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 CDSNQ15517 529 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 PRADC1Q9BSG0 188 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 TSSC4Q9Y5U2 329 aaPredicted RBP12.43□□□□□ -0.42
PCDH1-203ENST00000394536 LRRK2Q5S007 2527 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 WFDC2Q14508 124 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 LY6G5BQ8NDX9 201 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 AGRNO00468 2067 aa12.43□□□□□ -0.42
PCDH1-203ENST00000394536 A0A096LNJ9 63 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 A0A087WX48 190 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 CENPVL3A0A0U1RRI6 287 aa12.42□□□□□ -0.42
PCDH1-203ENST00000394536 LINC01549A6NIU2 74 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms