RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TSTD3H0UI37 97 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 NAGKQ9UJ70 344 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 TRAV8-2A0A0B4J237 113 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 A0A1B0GW15 77 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 TMEM189A5PLL7 270 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 ZNF324O75467 553 aaPredicted RBP7.66□□□□□ -1.18
VPS53-202ENST00000389040 PMCHP20382 165 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 AMTP48728 403 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 RIGQ13278 110 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 MRPL53Q96EL3 112 aaKnown RBP7.66□□□□□ -1.18
VPS53-202ENST00000389040 NDFIP1Q9BT67 221 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 SMPXQ9UHP9 88 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 WNK1Q9H4A3 2382 aa7.66□□□□□ -1.18
VPS53-202ENST00000389040 MGAM2Q2M2H8 2515 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 LOC102724200A0A096LPH7 203 aaPredicted RBP7.65□□□□□ -1.18
VPS53-202ENST00000389040 IGHV7-4-1A0A0J9YVY3 117 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 EREGO14944 169 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 ARMS2P0C7Q2 107 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 DEFB114Q30KQ6 69 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 BEAN1Q3B7T3 259 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 TM4SF20Q53R12 229 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 DYNLRB2Q8TF09 96 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 GLMPQ8WWB7 406 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 TPPP3Q9BW30 176 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 PRO1933Q9H354 126 aa7.65□□□□□ -1.18
VPS53-202ENST00000389040 TMSB15BA0A087X1C1 80 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 G3V4G9 280 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 ZNF80P51504 273 aaPredicted RBP7.64□□□□□ -1.19
VPS53-202ENST00000389040 ERCC8Q13216 396 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 GATD1Q8NB37 220 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 BORCS7Q96B45 105 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 RPS20P60866 119 aaKnown RBP7.64□□□□□ -1.19
VPS53-202ENST00000389040 CTAG1AP78358 180 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 ADAMTSL5Q6ZMM2 481 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 ZNF664Q8N3J9 261 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 NRN1Q9NPD7 142 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 CLEC5AQ9NY25 188 aa7.64□□□□□ -1.19
VPS53-202ENST00000389040 ZNF705DP0CH99 300 aaPredicted RBP7.63□□□□□ -1.19
VPS53-202ENST00000389040 ZNF705BP0CI00 300 aaPredicted RBP7.63□□□□□ -1.19
VPS53-202ENST00000389040 DDTP30046 118 aa7.63□□□□□ -1.19
VPS53-202ENST00000389040 RNASEKQ6P5S7 137 aaKnown RBP7.63□□□□□ -1.19
VPS53-202ENST00000389040 C16orf92Q96LL3 132 aa7.63□□□□□ -1.19
VPS53-202ENST00000389040 RHPN1-AS1Q9BWJ2 59 aa7.63□□□□□ -1.19
VPS53-202ENST00000389040 ZNF256Q9Y2P7 627 aaPredicted RBP7.63□□□□□ -1.19
VPS53-202ENST00000389040 TRAV2A0A0B4J234 112 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 HSBP1O75506 76 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 NTF3P20783 257 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 CMC4P56277 68 aaPredicted RBP7.62□□□□□ -1.19
VPS53-202ENST00000389040 TMEM78Q5T7P6 136 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 LYZL1Q6UWQ5 148 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 NIT1Q86X76 327 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 FAM19A2Q8N3H0 131 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 SPAG8Q99932 426 aaPredicted RBP7.62□□□□□ -1.19
VPS53-202ENST00000389040 AGPAT4-IT1Q9H0P7 198 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 FABP5P3A8MUU1 101 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 CTRLP40313 264 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 ZNF138P52744 262 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 KRTDAPP60985 99 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 CD300EQ496F6 205 aaPredicted RBP7.62□□□□□ -1.19
VPS53-202ENST00000389040 ZNF493Q6ZR52 646 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 FAM110AQ9BQ89 295 aa7.62□□□□□ -1.19
VPS53-202ENST00000389040 ORM1P02763 201 aa7.61□□□□□ -1.19
VPS53-202ENST00000389040 SAMD13Q5VXD3 122 aa7.61□□□□□ -1.19
VPS53-202ENST00000389040 TEX43Q6ZNM6 134 aa7.61□□□□□ -1.19
VPS53-202ENST00000389040 C9orf47Q6ZRZ4 202 aa7.61□□□□□ -1.19
VPS53-202ENST00000389040 URB1-AS1Q96HZ7 61 aa7.61□□□□□ -1.19
VPS53-202ENST00000389040 M0R2Z0 102 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 SOCS3O14543 225 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 IGLC6P0CF74 106 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 DEFA6Q01524 100 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 FER1L6-AS1Q8NA97 138 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 CHCHD1Q96BP2 118 aaKnown RBP7.6□□□□□ -1.19
VPS53-202ENST00000389040 C20orf173Q96LM9 149 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 KRTAP10-11P60412 298 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 HIST1H1AQ02539 215 aaPredicted RBP7.6□□□□□ -1.19
VPS53-202ENST00000389040 GTSCR1Q86UQ5 136 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 ZNF575Q86XF7 245 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 Q8N976 141 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 ZNF738Q8NE65 137 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 PPP1R14DQ9NXH3 145 aa7.6□□□□□ -1.19
VPS53-202ENST00000389040 NOTCH3Q9UM47 2321 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 KIR2DL5BA0A0G2JN68 375 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 KIR2DL5BA0A0G2JPC4 375 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 OR4C46A6NHA9 309 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 C3orf79P0CE67 100 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 SSTP61278 116 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 TMEM61Q8N0U2 210 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 KIR2DL5AQ8N109 375 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 LINC00528Q8N1L1 170 aa7.59□□□□□ -1.19
VPS53-202ENST00000389040 MUC21A0A0G2JKD1 596 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 MUC21A0A140T8X8 626 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 RPL11P62913 178 aaKnown RBP7.58□□□□□ -1.2
VPS53-202ENST00000389040 TWIST1Q15672 202 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 MUC21Q5SSG8 566 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 FAM104BQ5XKR9 115 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 CNFNQ9BYD5 112 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 IGKV3D-20A0A0C4DH25 116 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 A8MZ25 164 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 LINC00614P0C842 121 aa7.58□□□□□ -1.2
VPS53-202ENST00000389040 TDRG1Q3Y452 100 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms