RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 MED12Q93074 2177 aa7.16□□□□□ -1.26
LIMCH1-202ENST00000381753 ATOH7Q8N100 152 aa7.16□□□□□ -1.26
LIMCH1-202ENST00000381753 DEFB105AQ8NG35 78 aa7.16□□□□□ -1.26
LIMCH1-202ENST00000381753 ORAOV1Q8WV07 137 aa7.16□□□□□ -1.26
LIMCH1-202ENST00000381753 PRRC2AP48634 2157 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 A8MXK9 166 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 IGHV4-30-4P0DP06 118 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 ZNF295-AS1Q8N0V1 137 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 Q8N7P7 452 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 TMEM131Q92545 1883 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 IZUMO1RA6ND01 250 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 FRMD6-AS1P0C7T7 363 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 C9orf62Q8N4C0 152 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 OVOL2Q9BRP0 275 aa7.15□□□□□ -1.26
LIMCH1-202ENST00000381753 RBMY1FQ15415 496 aaKnown RBP7.15□□□□□ -1.27
LIMCH1-202ENST00000381753 NPBQ8NG41 125 aa7.15□□□□□ -1.27
LIMCH1-202ENST00000381753 TRAV1-1A0A0B4J248 108 aa7.15□□□□□ -1.27
LIMCH1-202ENST00000381753 A0A1W2PRE2 83 aa7.15□□□□□ -1.27
LIMCH1-202ENST00000381753 DPM2O94777 84 aa7.15□□□□□ -1.27
LIMCH1-202ENST00000381753 LINC00614P0C842 121 aa7.15□□□□□ -1.27
LIMCH1-202ENST00000381753 HIGD1CA8MV81 97 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 HLA-DRB4P13762 266 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 NHP2Q9NX24 153 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 HLA-DRB4X5D2U9 266 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 TMEM238C9JI98 176 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 G3V4G9 280 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 DDTP30046 118 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 C9orf85Q96MD7 179 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 TRAV8-2A0A0B4J237 113 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 MYMXA0A1B0GTQ4 84 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 LAGE3Q14657 143 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 MAP6D1Q9H9H5 199 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 NOTCH3Q9UM47 2321 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 MLANAQ16655 118 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 LYPD6Q86Y78 171 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 C8orf31Q8N9H6 132 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 PLEKHB2Q96CS7 222 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 DNAJC30Q96LL9 226 aa7.14□□□□□ -1.27
LIMCH1-202ENST00000381753 COX7A2LO14548 114 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 NDUFA1O15239 70 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 NDUFA4L2Q9NRX3 87 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 SCN8AQ9UQD0 1980 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 TRBV6-6A0A0A6YYG2 114 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 RPL23P62829 140 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 NMSQ5H8A3 153 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 LYZL1Q6UWQ5 148 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 IMMP2LQ96T52 175 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 TMEM242Q9NWH2 141 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 TRAV9-1A0A075B6T8 112 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 VSIG2Q96IQ7 327 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 CITED1Q99966 193 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 CSPG4Q6UVK1 2322 aa7.13□□□□□ -1.27
LIMCH1-202ENST00000381753 ETV2O00321 342 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 IGHG4P01861 327 aa7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 ZNF625Q96I27 306 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 SLC17A3O00476 420 aa7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 K7EMT4 169 aa7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 PLA2G10O15496 165 aa7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 NCR2O95944 276 aa7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 KRTAP24-1Q3LI83 254 aa7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 TRAV8-4A0A0B4J246 113 aa7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 IGHV4-28A0A0C4DH34 117 aa7.12□□□□□ -1.27
LIMCH1-202ENST00000381753 IGKV1-6A0A0C4DH72 117 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 NYNRINQ9P2P1 1898 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 KIF26AQ9ULI4 1882 aaPredicted RBP7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 PGPEP1LA6NFU8 196 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 ATP5L2Q7Z4Y8 100 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 MUC7Q8TAX7 377 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 TMEM263Q8WUH6 116 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 SNAI2O43623 268 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 IGKCP01834 107 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 HIST1H4AP62805 103 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 TIMM21Q9BVV7 248 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 RETNQ9HD89 108 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 ERG28Q9UKR5 140 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 C11orf71Q6IPW1 123 aa7.11□□□□□ -1.27
LIMCH1-202ENST00000381753 ZNF462Q96JM2 2506 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 NDUFS6O75380 124 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 LINC01559Q495D7 138 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 SCRT2Q9NQ03 307 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 SPCS1Q9Y6A9 102 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 DEFB114Q30KQ6 69 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 ZNF702PQ9H963 129 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 LECT2O14960 151 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 ID3Q02535 119 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 RTBDNQ9BSG5 229 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 IGLV2-8P01709 118 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 SSBP4Q9BWG4 385 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 RBM38Q9H0Z9 239 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 WDR83OSQ9Y284 106 aa7.1□□□□□ -1.27
LIMCH1-202ENST00000381753 A0A0A6YYD4 124 aa7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 CCL20P78556 96 aa7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 FREM3P0C091 2139 aa7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 RNASE7Q9H1E1 156 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 C2orf16Q68DN1 1984 aa7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 IFITM2Q01629 132 aa7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 C5orf38Q86SI9 138 aa7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 LINC00322Q6ZN03 302 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 C9orf47Q6ZRZ4 202 aa7.09□□□□□ -1.27
LIMCH1-202ENST00000381753 MGST2Q99735 147 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms