RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TMEM167BQ9NRX6 74 aa14.9□□□□□ -0.02
CCDC28B-201ENST00000373602 FXYD6-FXYD2A0A087WZ82 144 aa14.89□□□□□ -0.03
CCDC28B-201ENST00000373602 CXorf1O96002 111 aa14.89□□□□□ -0.03
CCDC28B-201ENST00000373602 TYMSP04818 313 aa14.89□□□□□ -0.03
CCDC28B-201ENST00000373602 NDFIP1Q9BT67 221 aa14.89□□□□□ -0.03
CCDC28B-201ENST00000373602 M0R2P5 195 aa14.88□□□□□ -0.03
CCDC28B-201ENST00000373602 SIVA1O15304 175 aa14.88□□□□□ -0.03
CCDC28B-201ENST00000373602 SUMO1P63165 101 aaKnown RBP14.88□□□□□ -0.03
CCDC28B-201ENST00000373602 OR2T35Q8NGX2 323 aa14.88□□□□□ -0.03
CCDC28B-201ENST00000373602 KCNS1Q96KK3 526 aa14.88□□□□□ -0.03
CCDC28B-201ENST00000373602 SDF2L1Q9HCN8 221 aa14.88□□□□□ -0.03
CCDC28B-201ENST00000373602 BORCS7-ASMTA0A0B4J1R7 106 aa14.87□□□□□ -0.03
CCDC28B-201ENST00000373602 TRAV4A0A0B4J268 109 aa14.87□□□□□ -0.03
CCDC28B-201ENST00000373602 K7EQM0 130 aa14.87□□□□□ -0.03
CCDC28B-201ENST00000373602 NXPH4O95158 308 aa14.87□□□□□ -0.03
CCDC28B-201ENST00000373602 LYPD5Q6UWN5 251 aa14.87□□□□□ -0.03
CCDC28B-201ENST00000373602 NEGR1Q7Z3B1 354 aa14.87□□□□□ -0.03
CCDC28B-201ENST00000373602 EPDR1Q9UM22 224 aa14.87□□□□□ -0.03
CCDC28B-201ENST00000373602 PSG8Q9UQ74 426 aa14.87□□□□□ -0.03
CCDC28B-201ENST00000373602 C16orf90A8MZG2 172 aa14.86□□□□□ -0.03
CCDC28B-201ENST00000373602 GGTLC3B5MD39 225 aa14.86□□□□□ -0.03
CCDC28B-201ENST00000373602 IGLV2-11P01706 119 aa14.86□□□□□ -0.03
CCDC28B-201ENST00000373602 G3V3Q6 166 aa14.85□□□□□ -0.03
CCDC28B-201ENST00000373602 K7EQD1 137 aa14.85□□□□□ -0.03
CCDC28B-201ENST00000373602 ZNF80P51504 273 aaPredicted RBP14.85□□□□□ -0.03
CCDC28B-201ENST00000373602 FLI1Q01543 452 aaPredicted RBP14.85□□□□□ -0.03
CCDC28B-201ENST00000373602 RGS21Q2M5E4 152 aa14.85□□□□□ -0.03
CCDC28B-201ENST00000373602 CYB561D1Q8N8Q1 229 aa14.85□□□□□ -0.03
CCDC28B-201ENST00000373602 OR4C5Q8NGB2 326 aa14.85□□□□□ -0.03
CCDC28B-201ENST00000373602 A0A1W2PRE2 83 aa14.84□□□□□ -0.03
CCDC28B-201ENST00000373602 ORM1P02763 201 aa14.84□□□□□ -0.03
CCDC28B-201ENST00000373602 GYPEP15421 78 aa14.84□□□□□ -0.03
CCDC28B-201ENST00000373602 SRIP30626 198 aa14.84□□□□□ -0.03
CCDC28B-201ENST00000373602 ZNF726P1Q15940 193 aa14.84□□□□□ -0.03
CCDC28B-201ENST00000373602 PCNPQ8WW12 178 aaKnown RBP14.84□□□□□ -0.03
CCDC28B-201ENST00000373602 C11orf21Q9P2W6 132 aa14.84□□□□□ -0.03
CCDC28B-201ENST00000373602 CTXND1A0A1B0GTU2 59 aa14.83□□□□□ -0.04
CCDC28B-201ENST00000373602 FBLL1A6NHQ2 334 aaKnown RBP14.83□□□□□ -0.04
CCDC28B-201ENST00000373602 TAAR5O14804 337 aa14.83□□□□□ -0.04
CCDC28B-201ENST00000373602 GCGP01275 180 aa14.83□□□□□ -0.04
CCDC28B-201ENST00000373602 LINC00315P59091 139 aa14.83□□□□□ -0.04
CCDC28B-201ENST00000373602 TMEM75Q8N9X5 138 aa14.83□□□□□ -0.04
CCDC28B-201ENST00000373602 PFN1P07737 140 aaKnown RBP14.82□□□□□ -0.04
CCDC28B-201ENST00000373602 SMUG1Q53HV7 270 aa14.82□□□□□ -0.04
CCDC28B-201ENST00000373602 PRNTQ86SH4 94 aa14.82□□□□□ -0.04
CCDC28B-201ENST00000373602 C9JCJ5 164 aa14.81□□□□□ -0.04
CCDC28B-201ENST00000373602 SPATA12Q7Z6I5 190 aa14.81□□□□□ -0.04
CCDC28B-201ENST00000373602 ZFP69Q49AA0 526 aa14.8□□□□□ -0.04
CCDC28B-201ENST00000373602 SAPCD1Q5SSQ6 148 aa14.8□□□□□ -0.04
CCDC28B-201ENST00000373602 Q6ZRN7 208 aaPredicted RBP14.8□□□□□ -0.04
CCDC28B-201ENST00000373602 TXNDC17Q9BRA2 123 aa14.8□□□□□ -0.04
CCDC28B-201ENST00000373602 GATA1P15976 413 aaPredicted RBP14.79□□□□□ -0.04
CCDC28B-201ENST00000373602 ZNF876PQ49A33 203 aa14.79□□□□□ -0.04
CCDC28B-201ENST00000373602 AKR1C8PQ5T2L2 129 aa14.79□□□□□ -0.04
CCDC28B-201ENST00000373602 LINC00479Q96M42 142 aa14.79□□□□□ -0.04
CCDC28B-201ENST00000373602 C9orf85Q96MD7 179 aa14.79□□□□□ -0.04
CCDC28B-201ENST00000373602 CYTL1Q9NRR1 136 aa14.79□□□□□ -0.04
CCDC28B-201ENST00000373602 LRP1BQ9NZR2 4599 aa14.78□□□□□ -0.04
CCDC28B-201ENST00000373602 ARPC5O15511 151 aa14.78□□□□□ -0.04
CCDC28B-201ENST00000373602 TRAV34A0A0B4J273 112 aa14.77□□□□□ -0.05
CCDC28B-201ENST00000373602 CDK2AP2O75956 126 aa14.77□□□□□ -0.05
CCDC28B-201ENST00000373602 IFNA7P01567 189 aa14.77□□□□□ -0.05
CCDC28B-201ENST00000373602 UBE2G2P60604 165 aa14.77□□□□□ -0.05
CCDC28B-201ENST00000373602 LY96Q9Y6Y9 160 aa14.77□□□□□ -0.05
CCDC28B-201ENST00000373602 RYR1P21817 5038 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 TRAV9-2A0A087WT02 112 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 LOC100131303A0A0U1RQF7 123 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 FAM74A7A6NL05 159 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 RS1O15537 224 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 CIDEAO60543 219 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 RNASE3P12724 160 aaKnown RBP14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 FGF8P55075 233 aaPredicted RBP14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 KRTAP10-2P60368 255 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 CFAP126Q5VTH2 177 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 DPPA3Q6W0C5 159 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 SH2D6Q7Z4S9 175 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 WFDC10BQ8IUB3 73 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 PTH2Q96A98 100 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 NKX6-2Q9C056 277 aaPredicted RBP14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 ARL2-SNX15V9GYD0 113 aa14.76□□□□□ -0.05
CCDC28B-201ENST00000373602 PEX7O00628 323 aa14.75□□□□□ -0.05
CCDC28B-201ENST00000373602 PPT1P50897 306 aa14.75□□□□□ -0.05
CCDC28B-201ENST00000373602 TNFRSF18Q9Y5U5 241 aa14.75□□□□□ -0.05
CCDC28B-201ENST00000373602 K7EP13 123 aa14.74□□□□□ -0.05
CCDC28B-201ENST00000373602 TIRAPP58753 221 aa14.74□□□□□ -0.05
CCDC28B-201ENST00000373602 HIST1H2BAQ96A08 127 aa14.74□□□□□ -0.05
CCDC28B-201ENST00000373602 HSPG2P98160 4391 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 IGKV3D-20A0A0C4DH25 116 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 MAP1LC3B2A6NCE7 125 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 PGPEP1LA6NFU8 196 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 SMLR1H3BR10 107 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 DNAH10OSP0CZ25 163 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 ZNF506Q5JVG8 444 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 Q86TA4 180 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 NFE4Q86UQ8 179 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 SLC25A29Q8N8R3 303 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 NHLRC2Q8NBF2 726 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 MAP1LC3BQ9GZQ8 125 aa14.73□□□□□ -0.05
CCDC28B-201ENST00000373602 TRBV6-4A0A1B0GX49 114 aa14.72□□□□□ -0.05
CCDC28B-201ENST00000373602 FABP5P3A8MUU1 101 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms