RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 K7EP13 123 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 K7EQD1 137 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 GNRH2O43555 120 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 TCRAP04437 139 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 GCHFRP30047 84 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 Q5BKY6 102 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 INO80EQ8NBZ0 244 aaPredicted RBP12.14□□□□□ -0.47
HDDC3-201ENST00000330334 NDFIP1Q9BT67 221 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 SDF2L1Q9HCN8 221 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 TMEM167BQ9NRX6 74 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 NAGKQ9UJ70 344 aa12.14□□□□□ -0.47
HDDC3-201ENST00000330334 FBLL1A6NHQ2 334 aaKnown RBP12.13□□□□□ -0.47
HDDC3-201ENST00000330334 K7EQM0 130 aa12.13□□□□□ -0.47
HDDC3-201ENST00000330334 CXorf1O96002 111 aa12.13□□□□□ -0.47
HDDC3-201ENST00000330334 SFTA3P0C7M3 94 aa12.13□□□□□ -0.47
HDDC3-201ENST00000330334 GNG5P63218 68 aa12.13□□□□□ -0.47
HDDC3-201ENST00000330334 ACTR3CQ9C0K3 210 aaPredicted RBP12.13□□□□□ -0.47
HDDC3-201ENST00000330334 TYMSP04818 313 aa12.12□□□□□ -0.47
HDDC3-201ENST00000330334 SRIP30626 198 aa12.12□□□□□ -0.47
HDDC3-201ENST00000330334 LINC00315P59091 139 aa12.12□□□□□ -0.47
HDDC3-201ENST00000330334 Q6ZRN7 208 aaPredicted RBP12.12□□□□□ -0.47
HDDC3-201ENST00000330334 SPATA12Q7Z6I5 190 aa12.12□□□□□ -0.47
HDDC3-201ENST00000330334 OR4C5Q8NGB2 326 aa12.12□□□□□ -0.47
HDDC3-201ENST00000330334 EPDR1Q9UM22 224 aa12.12□□□□□ -0.47
HDDC3-201ENST00000330334 TRAV9-2A0A087WT02 112 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 C9JCJ5 164 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 F6UZH7 168 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 TAAR5O14804 337 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 CIDEAO60543 219 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 IGLV2-11P01706 119 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 SUMO1P63165 101 aaKnown RBP12.11□□□□□ -0.47
HDDC3-201ENST00000330334 SH2D6Q7Z4S9 175 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 PCNPQ8WW12 178 aaKnown RBP12.11□□□□□ -0.47
HDDC3-201ENST00000330334 TXNDC17Q9BRA2 123 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 SH3BGRL3Q9H299 93 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 PSG8Q9UQ74 426 aa12.11□□□□□ -0.47
HDDC3-201ENST00000330334 A0A1W2PRE2 83 aa12.1□□□□□ -0.47
HDDC3-201ENST00000330334 RNF222A6NCQ9 220 aa12.1□□□□□ -0.47
HDDC3-201ENST00000330334 GYPEP15421 78 aa12.1□□□□□ -0.47
HDDC3-201ENST00000330334 BORCS7-ASMTA0A0B4J1R7 106 aa12.09□□□□□ -0.47
HDDC3-201ENST00000330334 GGTLC3B5MD39 225 aa12.09□□□□□ -0.47
HDDC3-201ENST00000330334 PFN1P07737 140 aaKnown RBP12.09□□□□□ -0.47
HDDC3-201ENST00000330334 FLI1Q01543 452 aaPredicted RBP12.09□□□□□ -0.47
HDDC3-201ENST00000330334 SAPCD1Q5SSQ6 148 aa12.09□□□□□ -0.47
HDDC3-201ENST00000330334 NFE4Q86UQ8 179 aa12.09□□□□□ -0.47
HDDC3-201ENST00000330334 CYB561D1Q8N8Q1 229 aa12.09□□□□□ -0.47
HDDC3-201ENST00000330334 TMEM75Q8N9X5 138 aa12.09□□□□□ -0.47
HDDC3-201ENST00000330334 PTH2Q96A98 100 aa12.09□□□□□ -0.47
HDDC3-201ENST00000330334 SGK494Q96LW2 274 aa12.09□□□□□ -0.47
HDDC3-201ENST00000330334 GATA1P15976 413 aaPredicted RBP12.08□□□□□ -0.48
HDDC3-201ENST00000330334 ZNF80P51504 273 aaPredicted RBP12.08□□□□□ -0.48
HDDC3-201ENST00000330334 TIRAPP58753 221 aa12.08□□□□□ -0.48
HDDC3-201ENST00000330334 SMUG1Q53HV7 270 aa12.08□□□□□ -0.48
HDDC3-201ENST00000330334 RPL7L1Q6DKI1 246 aaKnown RBP12.08□□□□□ -0.48
HDDC3-201ENST00000330334 LY96Q9Y6Y9 160 aa12.08□□□□□ -0.48
HDDC3-201ENST00000330334 DNAH5Q8TE73 4624 aa12.07□□□□□ -0.48
HDDC3-201ENST00000330334 GCGP01275 180 aa12.07□□□□□ -0.48
HDDC3-201ENST00000330334 DNAH10OSP0CZ25 163 aa12.07□□□□□ -0.48
HDDC3-201ENST00000330334 KRTAP10-2P60368 255 aa12.07□□□□□ -0.48
HDDC3-201ENST00000330334 ZNF876PQ49A33 203 aa12.07□□□□□ -0.48
HDDC3-201ENST00000330334 ZFP69Q49AA0 526 aa12.07□□□□□ -0.48
HDDC3-201ENST00000330334 OR2T35Q8NGX2 323 aa12.07□□□□□ -0.48
HDDC3-201ENST00000330334 NKX6-2Q9C056 277 aaPredicted RBP12.07□□□□□ -0.48
HDDC3-201ENST00000330334 C11orf21Q9P2W6 132 aa12.07□□□□□ -0.48
HDDC3-201ENST00000330334 FXYD6-FXYD2A0A087WZ82 144 aa12.06□□□□□ -0.48
HDDC3-201ENST00000330334 CTXND1A0A1B0GTU2 59 aa12.06□□□□□ -0.48
HDDC3-201ENST00000330334 C9orf85Q96MD7 179 aa12.06□□□□□ -0.48
HDDC3-201ENST00000330334 PGPEP1Q9NXJ5 209 aa12.06□□□□□ -0.48
HDDC3-201ENST00000330334 BOLA1Q9Y3E2 137 aa12.06□□□□□ -0.48
HDDC3-201ENST00000330334 APOBP04114 4563 aaKnown RBP12.06□□□□□ -0.48
HDDC3-201ENST00000330334 RS1O15537 224 aa12.05□□□□□ -0.48
HDDC3-201ENST00000330334 EVI2AP22794 236 aa12.05□□□□□ -0.48
HDDC3-201ENST00000330334 ZNF726P1Q15940 193 aa12.05□□□□□ -0.48
HDDC3-201ENST00000330334 PRNTQ86SH4 94 aa12.05□□□□□ -0.48
HDDC3-201ENST00000330334 TRBV6-4A0A1B0GX49 114 aa12.04□□□□□ -0.48
HDDC3-201ENST00000330334 EREGO14944 169 aa12.04□□□□□ -0.48
HDDC3-201ENST00000330334 PIK3CD-AS1Q5SR53 167 aa12.04□□□□□ -0.48
HDDC3-201ENST00000330334 CFAP126Q5VTH2 177 aa12.04□□□□□ -0.48
HDDC3-201ENST00000330334 WFDC10BQ8IUB3 73 aa12.04□□□□□ -0.48
HDDC3-201ENST00000330334 ABCA13Q86UQ4 5058 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 G3V3Q6 166 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 PPT1P50897 306 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 ERVFC1-1P60608 527 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 RGS21Q2M5E4 152 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 C10orf126Q8N4M7 172 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 SLC25A29Q8N8R3 303 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 HIST1H2BAQ96A08 127 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 PRADC1Q9BSG0 188 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 KRTAP4-5Q9BYR2 181 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 MSRB1Q9NZV6 116 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 TNFRSF18Q9Y5U5 241 aa12.03□□□□□ -0.48
HDDC3-201ENST00000330334 LOC100131303A0A0U1RQF7 123 aa12.02□□□□□ -0.49
HDDC3-201ENST00000330334 RNASE3P12724 160 aaKnown RBP12.02□□□□□ -0.49
HDDC3-201ENST00000330334 AKR1C8PQ5T2L2 129 aa12.02□□□□□ -0.49
HDDC3-201ENST00000330334 CDPF1Q6NVV7 123 aa12.02□□□□□ -0.49
HDDC3-201ENST00000330334 DPPA3Q6W0C5 159 aa12.02□□□□□ -0.49
HDDC3-201ENST00000330334 LINC00479Q96M42 142 aa12.02□□□□□ -0.49
HDDC3-201ENST00000330334 FABP5P3A8MUU1 101 aa12.01□□□□□ -0.49
HDDC3-201ENST00000330334 IFNA7P01567 189 aa12.01□□□□□ -0.49
HDDC3-201ENST00000330334 RHOHQ15669 191 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms