RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF134P52741 427 aa9.11□□□□□ -0.95
VPS39-201ENST00000318006 PRSS33Q8NF86 280 aa9.11□□□□□ -0.95
VPS39-201ENST00000318006 CHD3Q12873 2000 aaKnown RBP9.11□□□□□ -0.95
VPS39-201ENST00000318006 SYNJ2BPP57105 145 aa9.11□□□□□ -0.95
VPS39-201ENST00000318006 IGFL2Q6UWQ7 119 aa9.11□□□□□ -0.95
VPS39-201ENST00000318006 C11orf44Q8N8P7 122 aa9.11□□□□□ -0.95
VPS39-201ENST00000318006 RHODO00212 210 aa9.1□□□□□ -0.95
VPS39-201ENST00000318006 FOXI1Q12951 378 aa9.1□□□□□ -0.95
VPS39-201ENST00000318006 MRAPQ8TCY5 172 aa9.1□□□□□ -0.95
VPS39-201ENST00000318006 HAMPP81172 84 aa9.1□□□□□ -0.95
VPS39-201ENST00000318006 RBMY1FQ15415 496 aaKnown RBP9.1□□□□□ -0.95
VPS39-201ENST00000318006 LYPD6Q86Y78 171 aa9.1□□□□□ -0.95
VPS39-201ENST00000318006 SSC4DQ8WTU2 575 aa9.1□□□□□ -0.95
VPS39-201ENST00000318006 DAZ1Q9NQZ3 744 aaKnown RBP9.1□□□□□ -0.95
VPS39-201ENST00000318006 Q6ZSR3 168 aa9.09□□□□□ -0.95
VPS39-201ENST00000318006 INS-IGF2F8WCM5 200 aa9.09□□□□□ -0.95
VPS39-201ENST00000318006 INSP01308 110 aa9.09□□□□□ -0.95
VPS39-201ENST00000318006 IGHV3-53P01767 116 aa9.09□□□□□ -0.95
VPS39-201ENST00000318006 FAM110DQ8TAY7 271 aaPredicted RBP9.09□□□□□ -0.95
VPS39-201ENST00000318006 TRAV13-2A0A0B4J235 113 aa9.09□□□□□ -0.95
VPS39-201ENST00000318006 TMEM258P61165 79 aa9.09□□□□□ -0.95
VPS39-201ENST00000318006 ZNF493Q6ZR52 646 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 C11orf53Q8IXP5 236 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 TECTAO75443 2155 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 LINC01356Q8N9X3 169 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 J3KT08 172 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 KRTAP27-1Q3LI81 207 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 IGF2BP2-AS1Q96M15 143 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 KAAG1Q9UBP8 84 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 MSMBP08118 114 aa9.08□□□□□ -0.96
VPS39-201ENST00000318006 CMC4P56277 68 aaPredicted RBP9.08□□□□□ -0.96
VPS39-201ENST00000318006 RBM3P98179 157 aaKnown RBP9.08□□□□□ -0.96
VPS39-201ENST00000318006 FGF23Q9GZV9 251 aaPredicted RBP9.08□□□□□ -0.96
VPS39-201ENST00000318006 SS18Q15532 418 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 IGF2-ASQ6U949 168 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 ATP6V0E1O15342 81 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 EGR2P11161 476 aaPredicted RBP9.07□□□□□ -0.96
VPS39-201ENST00000318006 PIP4P2Q8N4L2 257 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 CEP350Q5VT06 3117 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 CR1LQ2VPA4 569 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 ATP6V0E2Q8NHE4 81 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 ZNF106Q9H2Y7 1883 aaKnown RBP9.07□□□□□ -0.96
VPS39-201ENST00000318006 FAM208BQ5VWN6 2430 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 OVOL3O00110 214 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 RUSC1-AS1Q66K80 236 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 COL4A3Q01955 1670 aa9.07□□□□□ -0.96
VPS39-201ENST00000318006 GATA3P23771 443 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 KNCNA6PVL3 124 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 C1orf43Q9BWL3 253 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 SPRY4Q9C004 299 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 TPSG1Q9NRR2 321 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 BAALC-AS2P0C853 105 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 RPL32P62910 135 aaKnown RBP9.06□□□□□ -0.96
VPS39-201ENST00000318006 IGHV1-69DA0A0B4J2H0 117 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 ATOX1O00244 68 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 IGHV1-69P01742 117 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 PFN2P35080 140 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 ZNF491Q8N8L2 437 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 DKK4Q9UBT3 224 aa9.06□□□□□ -0.96
VPS39-201ENST00000318006 IGHV1OR15-1A0A075B7D0 117 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 FAM236AA0A1B0GUQ0 79 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 FAM236BA0A1B0GV22 79 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 RS1O15537 224 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 LINC01620Q4KN68 170 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 TINCRA0A1B0GVN0 87 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 SRSF2Q01130 221 aaKnown RBP9.05□□□□□ -0.96
VPS39-201ENST00000318006 DIAPH2-AS1Q14236 149 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 F8WEM9 126 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 C17orf77Q96MU5 243 aa9.05□□□□□ -0.96
VPS39-201ENST00000318006 PTPRSQ13332 1948 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 TRAV12-1A0A0B4J245 112 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 A0A1W2PNU3 283 aaPredicted RBP9.04□□□□□ -0.96
VPS39-201ENST00000318006 CRLF1O75462 422 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 GATA1P15976 413 aaPredicted RBP9.04□□□□□ -0.96
VPS39-201ENST00000318006 RHOHQ15669 191 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 TCTEX1D4Q5JR98 221 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 SP5Q6BEB4 398 aaPredicted RBP9.04□□□□□ -0.96
VPS39-201ENST00000318006 PRSS47A8MTI9 375 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 RBX1P62877 108 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 HERVK_113P63121 156 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 NSUN5P1Q3KNT7 163 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 TTTY13Q9BZ97 58 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 MED13Q9UHV7 2174 aa9.04□□□□□ -0.96
VPS39-201ENST00000318006 C2orf70A6NJV1 201 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 G3V318 75 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 FRMD6-AS1P0C7T7 363 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 CENPFP49454 3210 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 A4D1N5 150 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 SPINK13Q1W4C9 94 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 RNF223E7ERA6 249 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 GTSF1Q8WW33 167 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 PCNTO95613 3336 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 DENND4AQ7Z401 1863 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 SPATA12Q7Z6I5 190 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 KLK9Q9UKQ9 250 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 ACACBO00763 2458 aa9.03□□□□□ -0.96
VPS39-201ENST00000318006 A0A0B4J2C4 111 aa9.02□□□□□ -0.96
VPS39-201ENST00000318006 GP9P14770 177 aa9.02□□□□□ -0.96
VPS39-201ENST00000318006 C8orf31Q8N9H6 132 aa9.02□□□□□ -0.96
VPS39-201ENST00000318006 DSCR8Q96T75 97 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms