RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 PFDN1O60925 122 aa13.63□□□□□ -0.23
PDZRN3-202ENST00000308537 ZNF80P51504 273 aaPredicted RBP13.63□□□□□ -0.23
PDZRN3-202ENST00000308537 CRYBA4P53673 196 aa13.63□□□□□ -0.23
PDZRN3-202ENST00000308537 IQCF2Q8IXL9 164 aa13.63□□□□□ -0.23
PDZRN3-202ENST00000308537 C6orf223Q8N319 242 aa13.63□□□□□ -0.23
PDZRN3-202ENST00000308537 TREM1Q9NP99 234 aa13.63□□□□□ -0.23
PDZRN3-202ENST00000308537 BCL2L11O43521 198 aa13.62□□□□□ -0.23
PDZRN3-202ENST00000308537 TYMSP04818 313 aa13.62□□□□□ -0.23
PDZRN3-202ENST00000308537 SOHLH1Q5JUK2 328 aa13.62□□□□□ -0.23
PDZRN3-202ENST00000308537 FAM159AQ6UWV7 190 aa13.62□□□□□ -0.23
PDZRN3-202ENST00000308537 OR11H4Q8NGC9 324 aa13.62□□□□□ -0.23
PDZRN3-202ENST00000308537 ZNF479Q96JC4 524 aa13.62□□□□□ -0.23
PDZRN3-202ENST00000308537 ZNF471Q9BX82 626 aaPredicted RBP13.62□□□□□ -0.23
PDZRN3-202ENST00000308537 RYR1P21817 5038 aa13.62□□□□□ -0.23
PDZRN3-202ENST00000308537 TRGV11A0A075B6L2 103 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 TRAV21A0A0B4J279 112 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 SERTM2A0A1B0GWG4 89 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 K7EQM0 130 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 SFTA3P0C7M3 94 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 TCTE3Q8IZS6 198 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 STOML3Q8TAV4 291 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 C8orf49Q96NF6 230 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 SPXQ9BT56 116 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 PRO0255Q9UI72 69 aa13.61□□□□□ -0.23
PDZRN3-202ENST00000308537 UMAD1C9J7I0 102 aa13.6□□□□□ -0.23
PDZRN3-202ENST00000308537 PAX4O43316 350 aa13.6□□□□□ -0.23
PDZRN3-202ENST00000308537 SEC11BP0C7V7 166 aa13.6□□□□□ -0.23
PDZRN3-202ENST00000308537 SUMO1P63165 101 aaKnown RBP13.6□□□□□ -0.23
PDZRN3-202ENST00000308537 KRTAP17-1Q9BYP8 105 aa13.6□□□□□ -0.23
PDZRN3-202ENST00000308537 NAGKQ9UJ70 344 aa13.6□□□□□ -0.23
PDZRN3-202ENST00000308537 EPDR1Q9UM22 224 aa13.6□□□□□ -0.23
PDZRN3-202ENST00000308537 ZNF575Q86XF7 245 aa13.59□□□□□ -0.23
PDZRN3-202ENST00000308537 NKX6-2Q9C056 277 aaPredicted RBP13.59□□□□□ -0.23
PDZRN3-202ENST00000308537 PSG8Q9UQ74 426 aa13.59□□□□□ -0.23
PDZRN3-202ENST00000308537 HHLA3Q9XRX5 114 aa13.59□□□□□ -0.23
PDZRN3-202ENST00000308537 APOBP04114 4563 aaKnown RBP13.58□□□□□ -0.23
PDZRN3-202ENST00000308537 A0A1W2PRE2 83 aa13.58□□□□□ -0.24
PDZRN3-202ENST00000308537 EIF5AL1Q6IS14 154 aaKnown RBP13.58□□□□□ -0.24
PDZRN3-202ENST00000308537 TMUB2Q71RG4 321 aa13.58□□□□□ -0.24
PDZRN3-202ENST00000308537 ICOSQ9Y6W8 199 aa13.58□□□□□ -0.24
PDZRN3-202ENST00000308537 A0A1W2PPQ1 181 aa13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 FBLL1A6NHQ2 334 aaKnown RBP13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 TPT1P13693 172 aaKnown RBP13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 FLI1Q01543 452 aaPredicted RBP13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 SLAQ13239 276 aa13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 AKAP14Q86UN6 197 aa13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 CYB561D1Q8N8Q1 229 aa13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 TMEM75Q8N9X5 138 aa13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 NDFIP1Q9BT67 221 aa13.57□□□□□ -0.24
PDZRN3-202ENST00000308537 TRAV4A0A0B4J268 109 aa13.56□□□□□ -0.24
PDZRN3-202ENST00000308537 M0R2P5 195 aa13.56□□□□□ -0.24
PDZRN3-202ENST00000308537 MED14OSP0DP75 135 aa13.56□□□□□ -0.24
PDZRN3-202ENST00000308537 DPPA3Q6W0C5 159 aa13.56□□□□□ -0.24
PDZRN3-202ENST00000308537 LINC00479Q96M42 142 aa13.56□□□□□ -0.24
PDZRN3-202ENST00000308537 MAP1LC3B2A6NCE7 125 aa13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 K7EQD1 137 aa13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 GCGP01275 180 aa13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 C1QBP02746 253 aa13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 TTC32Q5I0X7 151 aa13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 LYPD5Q6UWN5 251 aa13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 Q6ZRN7 208 aaPredicted RBP13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 MAP1LC3BQ9GZQ8 125 aa13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 SDF2L1Q9HCN8 221 aa13.55□□□□□ -0.24
PDZRN3-202ENST00000308537 FAM74A7A6NL05 159 aa13.54□□□□□ -0.24
PDZRN3-202ENST00000308537 IFNA7P01567 189 aa13.54□□□□□ -0.24
PDZRN3-202ENST00000308537 PFN1P07737 140 aaKnown RBP13.54□□□□□ -0.24
PDZRN3-202ENST00000308537 FGF8P55075 233 aaPredicted RBP13.54□□□□□ -0.24
PDZRN3-202ENST00000308537 MRPL23Q16540 153 aaKnown RBP13.54□□□□□ -0.24
PDZRN3-202ENST00000308537 KCNS1Q96KK3 526 aa13.54□□□□□ -0.24
PDZRN3-202ENST00000308537 C9orf85Q96MD7 179 aa13.54□□□□□ -0.24
PDZRN3-202ENST00000308537 hCG_2014768A0A024R1R8 64 aa13.53□□□□□ -0.24
PDZRN3-202ENST00000308537 TRAV34A0A0B4J273 112 aa13.53□□□□□ -0.24
PDZRN3-202ENST00000308537 NXPH4O95158 308 aa13.53□□□□□ -0.24
PDZRN3-202ENST00000308537 RNASE3P12724 160 aaKnown RBP13.53□□□□□ -0.24
PDZRN3-202ENST00000308537 PPT1P50897 306 aa13.53□□□□□ -0.24
PDZRN3-202ENST00000308537 PRNTQ86SH4 94 aa13.53□□□□□ -0.24
PDZRN3-202ENST00000308537 TRGV4A0A0C4DH28 118 aa13.52□□□□□ -0.25
PDZRN3-202ENST00000308537 SIVA1O15304 175 aa13.52□□□□□ -0.25
PDZRN3-202ENST00000308537 FAM213BQ8TBF2 198 aa13.52□□□□□ -0.25
PDZRN3-202ENST00000308537 IGKV3D-20A0A0C4DH25 116 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 LOC100131303A0A0U1RQF7 123 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 GYPEP15421 78 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 GATA1P15976 413 aaPredicted RBP13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 BTF3P20290 206 aaKnown RBP13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 FHITP49789 147 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 RAB5CP51148 216 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 LINC00315P59091 139 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 UBE2G2P60604 165 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 LGALSLQ3ZCW2 172 aaPredicted RBP13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 SMUG1Q53HV7 270 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 NEGR1Q7Z3B1 354 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 ARL2-SNX15V9GYD0 113 aa13.51□□□□□ -0.25
PDZRN3-202ENST00000308537 TEX46H3BTG2 121 aa13.5□□□□□ -0.25
PDZRN3-202ENST00000308537 ZFP69Q49AA0 526 aa13.5□□□□□ -0.25
PDZRN3-202ENST00000308537 SAPCD1Q5SSQ6 148 aa13.5□□□□□ -0.25
PDZRN3-202ENST00000308537 OR4C5Q8NGB2 326 aa13.5□□□□□ -0.25
PDZRN3-202ENST00000308537 SFT2D1Q8WV19 159 aa13.5□□□□□ -0.25
PDZRN3-202ENST00000308537 HIST1H2BAQ96A08 127 aa13.5□□□□□ -0.25
PDZRN3-202ENST00000308537 TCEAL7Q9BRU2 100 aa13.5□□□□□ -0.25
PDZRN3-202ENST00000308537 PEX7O00628 323 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms