RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 HAX1O00165 279 aa11.19□□□□□ -0.62
CCDC47-201ENST00000225726 TSSC4Q9Y5U2 329 aaPredicted RBP11.19□□□□□ -0.62
CCDC47-201ENST00000225726 HNRNPA3P51991 378 aaKnown RBP11.19□□□□□ -0.62
CCDC47-201ENST00000225726 LINC01559Q495D7 138 aa11.19□□□□□ -0.62
CCDC47-201ENST00000225726 PRR31Q5SQ13 230 aa11.19□□□□□ -0.62
CCDC47-201ENST00000225726 DLX4Q92988 240 aaPredicted RBP11.19□□□□□ -0.62
CCDC47-201ENST00000225726 INAFM1C9JVW0 142 aa11.19□□□□□ -0.62
CCDC47-201ENST00000225726 CAMPP49913 170 aa11.19□□□□□ -0.62
CCDC47-201ENST00000225726 GAGE1Q13065 139 aa11.19□□□□□ -0.62
CCDC47-201ENST00000225726 RAX2Q96IS3 184 aa11.19□□□□□ -0.62
CCDC47-201ENST00000225726 TIMM8BQ9Y5J9 83 aaPredicted RBP11.19□□□□□ -0.62
CCDC47-201ENST00000225726 TMSB15BA0A087X1C1 80 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 A0A1B0GUT8 65 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 HSBP1L1C9JCN9 74 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 SAP30O75446 220 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 SNRPD3P62318 126 aaKnown RBP11.18□□□□□ -0.62
CCDC47-201ENST00000225726 FAM19A4Q96LR4 140 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 TRBV7-9A0A0J9YWB2 115 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 RIGQ13278 110 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 HIST2H2BDQ6DRA6 164 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 NAA38Q9BRA0 125 aaKnown RBP11.18□□□□□ -0.62
CCDC47-201ENST00000225726 A0A1B0GW15 77 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 ORM1P02763 201 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 DEFB1P60022 68 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 FHL3Q13643 280 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 C11orf44Q8N8P7 122 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 BORCS7Q96B45 105 aa11.18□□□□□ -0.62
CCDC47-201ENST00000225726 CITED2Q99967 270 aaPredicted RBP11.18□□□□□ -0.62
CCDC47-201ENST00000225726 F6UB75 175 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 CSN3P07498 182 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 CRISP2P16562 243 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 PAFAH1B2P68402 229 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 RNF114Q9Y508 228 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 OTOGQ6ZRI0 2925 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 SLAQ13239 276 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 A0A1W2PRX2 142 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 ARMS2P0C7Q2 107 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 ZFAND2AQ8N6M9 145 aa11.17□□□□□ -0.62
CCDC47-201ENST00000225726 HIVEP2P31629 2446 aa11.16□□□□□ -0.62
CCDC47-201ENST00000225726 CCL24O00175 119 aa11.16□□□□□ -0.62
CCDC47-201ENST00000225726 ZNF688P0C7X2 276 aa11.16□□□□□ -0.62
CCDC47-201ENST00000225726 KIAA1644Q3SXP7 199 aa11.16□□□□□ -0.62
CCDC47-201ENST00000225726 PSMG4Q5JS54 123 aa11.16□□□□□ -0.62
CCDC47-201ENST00000225726 LYZL1Q6UWQ5 148 aa11.16□□□□□ -0.62
CCDC47-201ENST00000225726 GATD1Q8NB37 220 aa11.16□□□□□ -0.62
CCDC47-201ENST00000225726 TPPP3Q9BW30 176 aa11.16□□□□□ -0.62
CCDC47-201ENST00000225726 TRAV2A0A0B4J234 112 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 IGLC6P0CF74 106 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 CTRLP40313 264 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 PRR9Q5T870 116 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 ZNF575Q86XF7 245 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 FER1L6-AS1Q8NA97 138 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 MIEN1Q9BRT3 115 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 SSBP4Q9BWG4 385 aaPredicted RBP11.15□□□□□ -0.62
CCDC47-201ENST00000225726 PMCHP20382 165 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 PROK1P58294 105 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 Q0VG73 95 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 APRG1Q8IVJ8 170 aa11.15□□□□□ -0.62
CCDC47-201ENST00000225726 CSTL1Q9H114 145 aa11.15□□□□□ -0.63
CCDC47-201ENST00000225726 NTF3P20783 257 aa11.14□□□□□ -0.63
CCDC47-201ENST00000225726 TCTAP57738 103 aa11.14□□□□□ -0.63
CCDC47-201ENST00000225726 DYNLRB2Q8TF09 96 aa11.14□□□□□ -0.63
CCDC47-201ENST00000225726 C11orf21Q9P2W6 132 aa11.14□□□□□ -0.63
CCDC47-201ENST00000225726 SRIP30626 198 aa11.14□□□□□ -0.63
CCDC47-201ENST00000225726 OR10J3Q5JRS4 329 aa11.14□□□□□ -0.63
CCDC47-201ENST00000225726 IGKV3D-20A0A0C4DH25 116 aa11.14□□□□□ -0.63
CCDC47-201ENST00000225726 TRAV21A0A0B4J279 112 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 A0A0J9YX75 114 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 UBE2V1Q13404 147 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 BAGE3Q86Y29 109 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 ODF3Q96PU9 254 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 GPX1P07203 203 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 SPATA45Q537H7 98 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 OCIAD2Q56VL3 154 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 CST9LQ9H4G1 147 aa11.13□□□□□ -0.63
CCDC47-201ENST00000225726 EBLN2Q6P2I7 272 aa11.12□□□□□ -0.63
CCDC47-201ENST00000225726 TP53TG3Q9ULZ0 132 aa11.12□□□□□ -0.63
CCDC47-201ENST00000225726 DEFB114Q30KQ6 69 aa11.12□□□□□ -0.63
CCDC47-201ENST00000225726 J3KRW8 73 aa11.12□□□□□ -0.63
CCDC47-201ENST00000225726 CRLF1O75462 422 aa11.12□□□□□ -0.63
CCDC47-201ENST00000225726 SMAGPQ0VAQ4 97 aa11.12□□□□□ -0.63
CCDC47-201ENST00000225726 F2Z2F3 143 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 H0Y8G0 127 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 LEPP41159 167 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 FOXI2Q6ZQN5 318 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 ZNF493Q6ZR52 646 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 TMEM61Q8N0U2 210 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 LAMTOR2Q9Y2Q5 125 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 DUSP14O95147 198 aaKnown RBP11.11□□□□□ -0.63
CCDC47-201ENST00000225726 RNASE4P34096 147 aaKnown RBP11.11□□□□□ -0.63
CCDC47-201ENST00000225726 CNFNQ9BYD5 112 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 CUBNO60494 3623 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 KLLNB2CW77 178 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 Q6ZQT7 251 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 SIGLEC8Q9NYZ4 499 aa11.11□□□□□ -0.63
CCDC47-201ENST00000225726 CHTOPQ9Y3Y2 248 aaKnown RBP11.11□□□□□ -0.63
CCDC47-201ENST00000225726 ESDP10768 282 aa11.1□□□□□ -0.63
CCDC47-201ENST00000225726 MTORP42345 2549 aa11.1□□□□□ -0.63
CCDC47-201ENST00000225726 TRAV25A0A0B4J276 109 aa11.1□□□□□ -0.63
CCDC47-201ENST00000225726 ADARB2-AS1A8MUL3 147 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms