RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 NUP35Q8NFH5 326 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 FAM213BQ8TBF2 198 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 PAIP2Q9BPZ3 127 aaKnown RBP-0.29□□□□□ -2.46
VPS35-212ENST00000640313 SH3BGRL3Q9H299 93 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 LRTM1Q9HBL6 345 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 PRNDQ9UKY0 176 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 MYH7BA7E2Y1 1941 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 TACC2O95359 2948 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 DOPEY2Q9Y3R5 2298 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 SETD2Q9BYW2 2564 aaPredicted RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 PTPRDP23468 1912 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 TRPM1Q7Z4N2 1603 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 MYO5AQ9Y4I1 1855 aaKnown RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 A0A087WTM6 91 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 A0A0G2JMM0 328 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 C3orf85A0A1B0GTC6 90 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CXorf51AA0A1B0GTR3 108 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 A0A1W2PPB8 328 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 TMEM30CPA0ZSE6 113 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 KIR3DP1A8MWS1 328 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 H7BYZ3 331 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 FXYD1O00168 92 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 HMGB3O15347 200 aaKnown RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 MFSD11O43934 449 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 SERPINA1P01009 418 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 IGKCP01834 107 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 TRACP01848 142 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 IFNA6P05013 189 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 IFNA4P05014 189 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CSN2P05814 226 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 NMBP08949 121 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CTXN2P0C2S0 81 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 OGNP20774 298 aaKnown RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 SPRR2BP35325 72 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CDKN2CP42773 168 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 GNG5P63218 68 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 MRPS36P82909 103 aaKnown RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 RPL19P84098 196 aaKnown RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 RHOHQ15669 191 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 LTC4SQ16873 150 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 VMA21Q3ZAQ7 101 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CCSMST1Q4G0I0 132 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 LIN52Q52LA3 116 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 PTRHD1Q6GMV3 140 aaKnown RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 IDO2Q6ZQW0 420 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 ISOC1Q96CN7 298 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 DMAC1Q96GE9 116 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CFAP53Q96M91 514 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CIB3Q96Q77 187 aaPredicted RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 OR4C12Q96R67 309 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 C9orf16Q9BUW7 83 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 EFCAB11Q9BUY7 163 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 RTL8AQ9BWD3 113 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 OR2H1Q9GZK4 316 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 OR2J1Q9GZK6 312 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 MAP1LC3BQ9GZQ8 125 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CYP4F30PQ9H0H9 118 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 NMNAT1Q9HAN9 279 aaPredicted RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 C19orf12Q9NSK7 152 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 ARMC1Q9NVT9 282 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 FKBP11Q9NYL4 201 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 TPRKBQ9Y3C4 175 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 MPC1Q9Y5U8 109 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 NUP98P52948 1817 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 NINQ8N4C6 2090 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CSPG4Q6UVK1 2322 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 LAMB1P07942 1786 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 RBBP6Q7Z6E9 1792 aaKnown RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 EPG5Q9HCE0 2579 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 ZCCHC6Q5VYS8 1495 aaKnown RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 SIPA1L2Q9P2F8 1722 aaPredicted RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 BLMP54132 1417 aaPredicted RBP-0.3□□□□□ -2.46
VPS35-212ENST00000640313 FGD6Q6ZV73 1430 aa-0.3□□□□□ -2.46
VPS35-212ENST00000640313 CNOT1A5YKK6 2376 aaKnown RBP-0.31□□□□□ -2.46
VPS35-212ENST00000640313 SSC5DA1L4H1 1573 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 URB1O60287 2271 aaKnown RBP-0.31□□□□□ -2.46
VPS35-212ENST00000640313 TRBV27A0A0K0K1C4 114 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 TMEM189A5PLL7 270 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 SMIM23A6NLE4 172 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 RIIAD1A6NNX1 92 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 H7C1C5 153 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 AIPO00170 330 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 KPNA4O00629 521 aaPredicted RBP-0.31□□□□□ -2.46
VPS35-212ENST00000640313 CDC42EP2O14613 210 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 TPST1O60507 370 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 BANF1O75531 89 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 NDUFC2O95298 119 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 IFNA14P01570 189 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 CCKP06307 115 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 PYYP10082 97 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 SLC25A4P12235 298 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 IFITM1P13164 125 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 FABP4P15090 132 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 CAPZBP47756 277 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 CEBPGP53567 150 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 NDUFA6P56556 154 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 DNAJB13P59910 316 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 LCN6P62502 163 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 BLCAPP62952 87 aa-0.31□□□□□ -2.46
VPS35-212ENST00000640313 ITGB3BPQ13352 177 aaPredicted RBP-0.31□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms