RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SNURFLB1AK76 121 aa14.74□□□□□ -0.05
CLN3-240ENST00000631023 RGS13O14921 159 aa14.74□□□□□ -0.05
CLN3-240ENST00000631023 UBE2G2P60604 165 aa14.74□□□□□ -0.05
CLN3-240ENST00000631023 PRR9Q5T870 116 aa14.74□□□□□ -0.05
CLN3-240ENST00000631023 EIF4E3Q8N5X7 224 aaKnown RBP14.74□□□□□ -0.05
CLN3-240ENST00000631023 ZNF680Q8NEM1 530 aa14.74□□□□□ -0.05
CLN3-240ENST00000631023 SFT2D1Q8WV19 159 aa14.74□□□□□ -0.05
CLN3-240ENST00000631023 DYNC2H1Q8NCM8 4307 aaKnown RBP14.74□□□□□ -0.05
CLN3-240ENST00000631023 TRAV8-1A0A0A6YYK1 113 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 CBY3A6NI87 242 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 IFNA7P01567 189 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 DEFB130BP0DP73 79 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 DEFB130AP0DP74 79 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 CYB561D1Q8N8Q1 229 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 MBD3L1Q8WWY6 194 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 NDFIP1Q9BT67 221 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 NOP10Q9NPE3 64 aaKnown RBP14.73□□□□□ -0.05
CLN3-240ENST00000631023 FBLL1A6NHQ2 334 aaKnown RBP14.73□□□□□ -0.05
CLN3-240ENST00000631023 ANXA2RQ3ZCQ2 193 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 LYSTQ99698 3801 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 ATG101Q9BSB4 218 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 TREM1Q9NP99 234 aa14.73□□□□□ -0.05
CLN3-240ENST00000631023 FAM74A7A6NL05 159 aa14.72□□□□□ -0.05
CLN3-240ENST00000631023 Q6AWC8 147 aa14.72□□□□□ -0.05
CLN3-240ENST00000631023 IGHV4-4A0A075B6R2 117 aa14.71□□□□□ -0.05
CLN3-240ENST00000631023 IGHV1OR15-1A0A075B7D0 117 aa14.71□□□□□ -0.05
CLN3-240ENST00000631023 H2AFB1P0C5Y9 115 aa14.71□□□□□ -0.05
CLN3-240ENST00000631023 RAB5CP51148 216 aa14.71□□□□□ -0.05
CLN3-240ENST00000631023 ZFP69Q49AA0 526 aa14.71□□□□□ -0.05
CLN3-240ENST00000631023 SLC51BQ86UW2 128 aa14.71□□□□□ -0.05
CLN3-240ENST00000631023 PLECQ15149 4684 aaKnown RBP14.7□□□□□ -0.06
CLN3-240ENST00000631023 HTN3P15516 51 aa14.7□□□□□ -0.06
CLN3-240ENST00000631023 TMEM75Q8N9X5 138 aa14.7□□□□□ -0.06
CLN3-240ENST00000631023 LINC00476Q8WZB0 136 aa14.7□□□□□ -0.06
CLN3-240ENST00000631023 SGK494Q96LW2 274 aa14.7□□□□□ -0.06
CLN3-240ENST00000631023 PSG8Q9UQ74 426 aa14.7□□□□□ -0.06
CLN3-240ENST00000631023 ARL2-SNX15V9GYD0 113 aa14.7□□□□□ -0.06
CLN3-240ENST00000631023 PPT1P50897 306 aa14.69□□□□□ -0.06
CLN3-240ENST00000631023 FLI1Q01543 452 aaPredicted RBP14.69□□□□□ -0.06
CLN3-240ENST00000631023 DAZ2Q13117 558 aaKnown RBP14.69□□□□□ -0.06
CLN3-240ENST00000631023 HIST1H2BAQ96A08 127 aa14.69□□□□□ -0.06
CLN3-240ENST00000631023 FAM210BQ96KR6 192 aa14.69□□□□□ -0.06
CLN3-240ENST00000631023 APLNQ9ULZ1 77 aa14.69□□□□□ -0.06
CLN3-240ENST00000631023 A0A1B0GVG6 124 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 F6UZH7 168 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 CST9LP1Q5W188 147 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 FAM159AQ6UWV7 190 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 Q6ZQT7 251 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 TVP23CQ96ET8 276 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 NDUFAF3Q9BU61 184 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 GSN-AS1Q9NRJ2 163 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 TRAV21A0A0B4J279 112 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 LY6G6CO95867 125 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 SAPCD1Q5SSQ6 148 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 IBA57Q5T440 356 aaKnown RBP14.68□□□□□ -0.06
CLN3-240ENST00000631023 PRNTQ86SH4 94 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 TCEAL7Q9BRU2 100 aa14.68□□□□□ -0.06
CLN3-240ENST00000631023 PEX7O00628 323 aa14.67□□□□□ -0.06
CLN3-240ENST00000631023 IGLV2-11P01706 119 aa14.67□□□□□ -0.06
CLN3-240ENST00000631023 ATP5G1P05496 136 aa14.67□□□□□ -0.06
CLN3-240ENST00000631023 ATP5G3P48201 142 aa14.67□□□□□ -0.06
CLN3-240ENST00000631023 MUC21Q5SSG8 566 aa14.67□□□□□ -0.06
CLN3-240ENST00000631023 C9orf62Q8N4C0 152 aa14.67□□□□□ -0.06
CLN3-240ENST00000631023 C11orf72Q8NBR9 251 aa14.67□□□□□ -0.06
CLN3-240ENST00000631023 A0A1B0GV50 99 aa14.66□□□□□ -0.06
CLN3-240ENST00000631023 TEX46H3BTG2 121 aa14.66□□□□□ -0.06
CLN3-240ENST00000631023 LGALS9CQ6DKI2 356 aa14.66□□□□□ -0.06
CLN3-240ENST00000631023 TP53TG3Q9ULZ0 132 aa14.66□□□□□ -0.06
CLN3-240ENST00000631023 PAGE4O60829 102 aa14.65□□□□□ -0.06
CLN3-240ENST00000631023 SULT1A2P50226 295 aa14.65□□□□□ -0.06
CLN3-240ENST00000631023 TCL1AP56279 114 aa14.65□□□□□ -0.06
CLN3-240ENST00000631023 LINC00612Q8N6U2 182 aa14.65□□□□□ -0.06
CLN3-240ENST00000631023 NAGKQ9UJ70 344 aa14.65□□□□□ -0.06
CLN3-240ENST00000631023 SACSQ9NZJ4 4579 aa14.65□□□□□ -0.06
CLN3-240ENST00000631023 MUC4Q99102 2169 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 ZNF415Q09FC8 603 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 SMUG1Q53HV7 270 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 LINC00479Q96M42 142 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 ALMS1Q8TCU4 4167 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 TRGV11A0A075B6L2 103 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 TRAV1-1A0A0B4J248 108 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 TRAV34A0A0B4J273 112 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 GAGE12BA1L429 117 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 F5H768 121 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 GAGE7O76087 117 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 GAGE12FP0CL80 117 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 GAGE12GP0CL81 117 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 GAGE12IP0CL82 117 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 TDRG1Q3Y452 100 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 C8orf49Q96NF6 230 aa14.64□□□□□ -0.07
CLN3-240ENST00000631023 KCNS1Q96KK3 526 aa14.63□□□□□ -0.07
CLN3-240ENST00000631023 KLF12Q9Y4X4 402 aa14.63□□□□□ -0.07
CLN3-240ENST00000631023 TRGV1A0A0A0MS02 117 aa14.62□□□□□ -0.07
CLN3-240ENST00000631023 GCGP01275 180 aa14.62□□□□□ -0.07
CLN3-240ENST00000631023 UBE2G1P62253 170 aa14.62□□□□□ -0.07
CLN3-240ENST00000631023 TMEM183BQ1AE95 376 aa14.62□□□□□ -0.07
CLN3-240ENST00000631023 Q6ZTI0 123 aa14.62□□□□□ -0.07
CLN3-240ENST00000631023 TMEM183AQ8IXX5 376 aa14.62□□□□□ -0.07
CLN3-240ENST00000631023 FMC1Q96HJ9 113 aa14.62□□□□□ -0.07
CLN3-240ENST00000631023 DNAH1Q9P2D7 4330 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms