RNA–Protein interactions for RNA: ENST00000622020.4

NPHP4-211, Transcript of nephrocystin 4, humanhuman

TSL 5 BASIC

Gene NPHP4, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-211ENST00000622020 NDUFA3O95167 84 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 SMIM13P0DJ93 91 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 EFNA4P52798 201 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 COL25A1Q9BXS0 654 aaPredicted RBP12.19□□□□□ -0.46
NPHP4-211ENST00000622020 LINC00527Q9UJ94 153 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 LINC01548A6NM66 108 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 G3V318 75 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 FABP2P12104 132 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 CLEC19AQ6UXS0 136 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 NPBQ8NG41 125 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 CHAC1Q9BUX1 264 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 IGKV3D-20A0A0C4DH25 116 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 VMO1Q7Z5L0 202 aa12.19□□□□□ -0.46
NPHP4-211ENST00000622020 CHTOPQ9Y3Y2 248 aaKnown RBP12.19□□□□□ -0.46
NPHP4-211ENST00000622020 IGKCP01834 107 aa12.18□□□□□ -0.46
NPHP4-211ENST00000622020 IGF2-ASQ6U949 168 aa12.18□□□□□ -0.46
NPHP4-211ENST00000622020 SRSF8Q9BRL6 282 aaKnown RBP12.18□□□□□ -0.46
NPHP4-211ENST00000622020 GTSF1LQ9H1H1 148 aa12.18□□□□□ -0.46
NPHP4-211ENST00000622020 MRPL35Q9NZE8 188 aaKnown RBP12.18□□□□□ -0.46
NPHP4-211ENST00000622020 TRBV25-1A0A075B6N4 114 aa12.18□□□□□ -0.46
NPHP4-211ENST00000622020 DEFB1P60022 68 aa12.18□□□□□ -0.46
NPHP4-211ENST00000622020 OR11H6Q8NGC7 330 aa12.18□□□□□ -0.46
NPHP4-211ENST00000622020 IGHV7-81A0A0B4J1V7 117 aa12.17□□□□□ -0.46
NPHP4-211ENST00000622020 SMIM17P0DL12 118 aa12.17□□□□□ -0.46
NPHP4-211ENST00000622020 MAPKAPK5-AS1Q8N8E1 139 aa12.17□□□□□ -0.46
NPHP4-211ENST00000622020 DPF1Q92782 380 aa12.17□□□□□ -0.46
NPHP4-211ENST00000622020 CCL21O00585 134 aa12.17□□□□□ -0.46
NPHP4-211ENST00000622020 SAMD13Q5VXD3 122 aa12.17□□□□□ -0.46
NPHP4-211ENST00000622020 TTC9CQ8N5M4 171 aa12.17□□□□□ -0.46
NPHP4-211ENST00000622020 AGPAT4-IT1Q9H0P7 198 aa12.17□□□□□ -0.46
NPHP4-211ENST00000622020 LY6G5BQ8NDX9 201 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 NPFFR1Q9GZQ6 430 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 Q5PR19 223 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 NEGR1Q7Z3B1 354 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 TIMD4Q96H15 378 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 IGKV3-7A0A075B6H7 116 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 IGF1P05019 195 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 ZFP36P26651 326 aaKnown RBP12.16□□□□□ -0.46
NPHP4-211ENST00000622020 SMAGPQ0VAQ4 97 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 AMTNQ6UX39 209 aa12.16□□□□□ -0.46
NPHP4-211ENST00000622020 TEX48A0A1B0GUV7 120 aa12.15□□□□□ -0.46
NPHP4-211ENST00000622020 PRTN3P24158 256 aa12.15□□□□□ -0.46
NPHP4-211ENST00000622020 SPANXN1Q5VSR9 72 aa12.15□□□□□ -0.46
NPHP4-211ENST00000622020 SPG11Q96JI7 2443 aa12.14□□□□□ -0.47
NPHP4-211ENST00000622020 H3BVH4 76 aa12.14□□□□□ -0.47
NPHP4-211ENST00000622020 SIVA1O15304 175 aa12.14□□□□□ -0.47
NPHP4-211ENST00000622020 ATP6V0E1O15342 81 aa12.14□□□□□ -0.47
NPHP4-211ENST00000622020 BUB3O43684 328 aa12.14□□□□□ -0.47
NPHP4-211ENST00000622020 NXT2Q9NPJ8 142 aaKnown RBP12.14□□□□□ -0.47
NPHP4-211ENST00000622020 DPM2O94777 84 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 FOXC1Q12948 553 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 SFTA2Q6UW10 78 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 IGHV3OR16-10A0A075B7F0 116 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 AZU1P20160 251 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 ODF3BA8MYP8 253 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 M0R381 172 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 MYOZ3Q8TDC0 251 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 CLUHP3Q96NS8 147 aa12.13□□□□□ -0.47
NPHP4-211ENST00000622020 TMEM78Q5T7P6 136 aa12.12□□□□□ -0.47
NPHP4-211ENST00000622020 HIF1ANQ9NWT6 349 aa12.12□□□□□ -0.47
NPHP4-211ENST00000622020 Q8N9W7 124 aa12.12□□□□□ -0.47
NPHP4-211ENST00000622020 VKORC1Q9BQB6 163 aa12.12□□□□□ -0.47
NPHP4-211ENST00000622020 MSRB2Q9Y3D2 182 aa12.12□□□□□ -0.47
NPHP4-211ENST00000622020 H3BMG7 143 aa12.11□□□□□ -0.47
NPHP4-211ENST00000622020 TMEM219Q86XT9 240 aa12.11□□□□□ -0.47
NPHP4-211ENST00000622020 WFDC2Q14508 124 aa12.11□□□□□ -0.47
NPHP4-211ENST00000622020 NCOR2Q9Y618 2525 aa12.11□□□□□ -0.47
NPHP4-211ENST00000622020 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.11□□□□□ -0.471e-7■■■■■ 40.5
NPHP4-211ENST00000622020 Q8N8P6 123 aa12.11□□□□□ -0.47
NPHP4-211ENST00000622020 HIST1H4GQ99525 98 aa12.11□□□□□ -0.47
NPHP4-211ENST00000622020 LINC01559Q495D7 138 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 CCDC144NLQ6NUI1 221 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 SH2D6Q7Z4S9 175 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 GLMPQ8WWB7 406 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 ZFAND3Q9H8U3 227 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 CUBNO60494 3623 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 SCGB2A1O75556 95 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 LAGE3Q14657 143 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 COX8CQ7Z4L0 72 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 CEND1Q8N111 149 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 OR5A1Q8NGJ0 315 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 ZNF502Q8TBZ5 544 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 CCDC140Q96MF4 163 aa12.1□□□□□ -0.47
NPHP4-211ENST00000622020 CLPSL1A2RUU4 121 aa12.09□□□□□ -0.47
NPHP4-211ENST00000622020 PRR9Q5T870 116 aa12.09□□□□□ -0.47
NPHP4-211ENST00000622020 ZMAT4Q9H898 229 aa12.09□□□□□ -0.47
NPHP4-211ENST00000622020 CHD8Q9HCK8 2581 aa12.09□□□□□ -0.47
NPHP4-211ENST00000622020 TRAV8-2A0A0B4J237 113 aa12.09□□□□□ -0.47
NPHP4-211ENST00000622020 C8orf86Q6ZUL3 223 aa12.09□□□□□ -0.47
NPHP4-211ENST00000622020 IGLV2-18A0A075B6J9 118 aa12.08□□□□□ -0.47
NPHP4-211ENST00000622020 IGHV7-4-1A0A0J9YVY3 117 aa12.08□□□□□ -0.47
NPHP4-211ENST00000622020 RPL11P62913 178 aaKnown RBP12.08□□□□□ -0.47
NPHP4-211ENST00000622020 ZNF48Q96MX3 618 aaPredicted RBP12.08□□□□□ -0.47
NPHP4-211ENST00000622020 PSMG3-AS1Q96PY0 264 aa12.08□□□□□ -0.47
NPHP4-211ENST00000622020 CNFNQ9BYD5 112 aa12.08□□□□□ -0.47
NPHP4-211ENST00000622020 NRACQ8N912 160 aa12.08□□□□□ -0.48
NPHP4-211ENST00000622020 C16orf92Q96LL3 132 aa12.08□□□□□ -0.48
NPHP4-211ENST00000622020 TSSC4Q9Y5U2 329 aaPredicted RBP12.08□□□□□ -0.48
NPHP4-211ENST00000622020 M0R1W7 72 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms