RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 EREGO14944 169 aa8.96□□□□□ -0.97
VRK3-223ENST00000601341 CT45A10P0DMU9 189 aa8.96□□□□□ -0.97
VRK3-223ENST00000601341 TDRG1Q3Y452 100 aa8.96□□□□□ -0.97
VRK3-223ENST00000601341 UBE2E2Q96LR5 201 aa8.96□□□□□ -0.97
VRK3-223ENST00000601341 SGK494Q96LW2 274 aa8.96□□□□□ -0.97
VRK3-223ENST00000601341 RNF114Q9Y508 228 aa8.96□□□□□ -0.97
VRK3-223ENST00000601341 NF1P21359 2839 aa8.96□□□□□ -0.97
VRK3-223ENST00000601341 CUBNO60494 3623 aa8.96□□□□□ -0.97
VRK3-223ENST00000601341 C2orf70A6NJV1 201 aa8.96□□□□□ -0.98
VRK3-223ENST00000601341 NTF3P20783 257 aa8.96□□□□□ -0.98
VRK3-223ENST00000601341 SRSF2Q01130 221 aaKnown RBP8.96□□□□□ -0.98
VRK3-223ENST00000601341 ZNF705AQ6ZN79 300 aaPredicted RBP8.96□□□□□ -0.98
VRK3-223ENST00000601341 ZNF493Q6ZR52 646 aa8.96□□□□□ -0.98
VRK3-223ENST00000601341 FAM19A2Q8N3H0 131 aa8.96□□□□□ -0.98
VRK3-223ENST00000601341 ZC2HC1AQ96GY0 325 aa8.96□□□□□ -0.98
VRK3-223ENST00000601341 SSBP4Q9BWG4 385 aaPredicted RBP8.96□□□□□ -0.98
VRK3-223ENST00000601341 PEF1Q9UBV8 284 aaKnown RBP8.96□□□□□ -0.98
VRK3-223ENST00000601341 IGHV3-35A0A0C4DH35 117 aa8.95□□□□□ -0.98
VRK3-223ENST00000601341 ZNF785A8K8V0 405 aa8.95□□□□□ -0.98
VRK3-223ENST00000601341 H3BTX0 84 aa8.95□□□□□ -0.98
VRK3-223ENST00000601341 TRBV12-3P01733 135 aa8.95□□□□□ -0.98
VRK3-223ENST00000601341 LINC00614P0C842 121 aa8.95□□□□□ -0.98
VRK3-223ENST00000601341 SPATA45Q537H7 98 aa8.95□□□□□ -0.98
VRK3-223ENST00000601341 RNASEKQ6P5S7 137 aaKnown RBP8.95□□□□□ -0.98
VRK3-223ENST00000601341 TMEM70Q9BUB7 260 aa8.95□□□□□ -0.98
VRK3-223ENST00000601341 RABAC1Q9UI14 185 aa8.95□□□□□ -0.98
VRK3-223ENST00000601341 LGALS1P09382 135 aaKnown RBP8.94□□□□□ -0.98
VRK3-223ENST00000601341 IGLC3P0DOY3 106 aa8.94□□□□□ -0.98
VRK3-223ENST00000601341 RPS20P60866 119 aaKnown RBP8.94□□□□□ -0.98
VRK3-223ENST00000601341 C17orf77Q96MU5 243 aa8.94□□□□□ -0.98
VRK3-223ENST00000601341 TRAV9-2A0A087WT02 112 aa8.94□□□□□ -0.98
VRK3-223ENST00000601341 A0A087X0K7 114 aa8.94□□□□□ -0.98
VRK3-223ENST00000601341 NDUFA4O00483 81 aa8.94□□□□□ -0.98
VRK3-223ENST00000601341 WFDC12Q8WWY7 111 aa8.94□□□□□ -0.98
VRK3-223ENST00000601341 URB1-AS1Q96HZ7 61 aa8.94□□□□□ -0.98
VRK3-223ENST00000601341 CLPSL1A2RUU4 121 aa8.93□□□□□ -0.98
VRK3-223ENST00000601341 RBAKDNA6NC62 111 aa8.93□□□□□ -0.98
VRK3-223ENST00000601341 TCAPO15273 167 aa8.93□□□□□ -0.98
VRK3-223ENST00000601341 BMI1P35226 326 aa8.93□□□□□ -0.98
VRK3-223ENST00000601341 TCTEX1D4Q5JR98 221 aa8.93□□□□□ -0.98
VRK3-223ENST00000601341 ZFAND3Q9H8U3 227 aa8.93□□□□□ -0.98
VRK3-223ENST00000601341 MRPS16Q9Y3D3 137 aaKnown RBP8.93□□□□□ -0.98
VRK3-223ENST00000601341 CRIP1P50238 77 aa8.92□□□□□ -0.98
VRK3-223ENST00000601341 FAM106AQ4KMX7 169 aa8.92□□□□□ -0.98
VRK3-223ENST00000601341 KHDC1LQ5JSQ8 128 aa8.92□□□□□ -0.98
VRK3-223ENST00000601341 EBLN2Q6P2I7 272 aa8.92□□□□□ -0.98
VRK3-223ENST00000601341 HSPB8Q9UJY1 196 aa8.92□□□□□ -0.98
VRK3-223ENST00000601341 IGHV3OR16-8A0A075B7F1 116 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 LEPROTL1O95214 131 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 PROK1P58294 105 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 C4orf3Q8WVX3 66 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 PRR25Q96S07 402 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 METTL26Q96S19 204 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 IGHV1-24A0A0C4DH33 117 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 M0R3E3 92 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 ARMS2P0C7Q2 107 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 GAGE1Q13065 139 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 COL5A1-AS1Q5SY13 56 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 PET117Q6UWS5 81 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 SPATA12Q7Z6I5 190 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 GPHB5Q86YW7 130 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 MRPL53Q96EL3 112 aaKnown RBP8.91□□□□□ -0.98
VRK3-223ENST00000601341 SLC50A1Q9BRV3 221 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 ST20Q9HBF5 79 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 CLEC5AQ9NY25 188 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 U3KQK5 164 aa8.91□□□□□ -0.98
VRK3-223ENST00000601341 TMEM189A5PLL7 270 aa8.9□□□□□ -0.98
VRK3-223ENST00000601341 SYS1-DBNDD2H3BUS1 97 aa8.9□□□□□ -0.98
VRK3-223ENST00000601341 UNQ9165/PRO28630Q6UXU0 137 aa8.9□□□□□ -0.98
VRK3-223ENST00000601341 CNFNQ9BYD5 112 aa8.9□□□□□ -0.98
VRK3-223ENST00000601341 NIPBLQ6KC79 2804 aaeCLIP8.9□□□□□ -0.98
VRK3-223ENST00000601341 SETD2Q9BYW2 2564 aaPredicted RBP8.9□□□□□ -0.98
VRK3-223ENST00000601341 CD28P10747 220 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 C11orf44Q8N8P7 122 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 KLHL30-AS1Q8NEE0 82 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 MAP1LC3CQ9BXW4 147 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 TMEM191AQ9H0A3 160 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 AP5S1Q9NUS5 200 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 TSSC4Q9Y5U2 329 aaPredicted RBP8.89□□□□□ -0.99
VRK3-223ENST00000601341 C2CD3Q4AC94 2353 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 IGHV4OR15-8A0A075B7B6 117 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 A0A087WW49 117 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 BUB3O43684 328 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 SH2D1AO60880 128 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 HNRNPA3P51991 378 aaKnown RBP8.89□□□□□ -0.99
VRK3-223ENST00000601341 C18orf65Q6ZTR6 163 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 DPF1Q92782 380 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 DAZ1Q9NQZ3 744 aaKnown RBP8.89□□□□□ -0.99
VRK3-223ENST00000601341 PPP1R14DQ9NXH3 145 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 UFC1Q9Y3C8 167 aa8.89□□□□□ -0.99
VRK3-223ENST00000601341 JMJD1CQ15652 2540 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 LINC01619G3V211 115 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 K7EMT4 169 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 ZNF207O43670 478 aaKnown RBP8.88□□□□□ -0.99
VRK3-223ENST00000601341 TSPOP30536 169 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 HOXD3P31249 432 aaPredicted RBP8.88□□□□□ -0.99
VRK3-223ENST00000601341 FAM104BQ5XKR9 115 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 Q6ZN92 141 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 OR11H1Q8NG94 326 aa8.88□□□□□ -0.99
VRK3-223ENST00000601341 CITED2Q99967 270 aaPredicted RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms