RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PRAF2O60831 178 aa9.36□□□□□ -0.91
TRIM28-211ENST00000597968 CSN1S1P47710 185 aa9.36□□□□□ -0.91
TRIM28-211ENST00000597968 ZNF415Q09FC8 603 aa9.36□□□□□ -0.91
TRIM28-211ENST00000597968 MRPL23Q16540 153 aaKnown RBP9.36□□□□□ -0.91
TRIM28-211ENST00000597968 NFE4Q86UQ8 179 aa9.36□□□□□ -0.91
TRIM28-211ENST00000597968 IQCF2Q8IXL9 164 aa9.36□□□□□ -0.91
TRIM28-211ENST00000597968 KRTAP4-5Q9BYR2 181 aa9.36□□□□□ -0.91
TRIM28-211ENST00000597968 WDR61Q9GZS3 305 aaKnown RBP9.36□□□□□ -0.91
TRIM28-211ENST00000597968 TRAV9-2A0A087WT02 112 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 EREGO14944 169 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 CDPF1Q6NVV7 123 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 ARL6IP6Q8N6S5 226 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 PPP1R1CQ8WVI7 109 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 TMED6Q8WW62 240 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 MARVELD1Q9BSK0 173 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 SPXQ9BT56 116 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 PAXXQ9BUH6 204 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 HHLA3Q9XRX5 114 aa9.35□□□□□ -0.91
TRIM28-211ENST00000597968 SSNA1O43805 119 aa9.34□□□□□ -0.91
TRIM28-211ENST00000597968 CRYBA4P53673 196 aa9.34□□□□□ -0.91
TRIM28-211ENST00000597968 LINC00315P59091 139 aa9.34□□□□□ -0.91
TRIM28-211ENST00000597968 ZNF266Q14584 549 aa9.34□□□□□ -0.91
TRIM28-211ENST00000597968 FAM122CQ6P4D5 195 aa9.34□□□□□ -0.91
TRIM28-211ENST00000597968 FXYD5Q96DB9 178 aa9.34□□□□□ -0.91
TRIM28-211ENST00000597968 BOLA1Q9Y3E2 137 aa9.34□□□□□ -0.91
TRIM28-211ENST00000597968 IGKV2-40A0A087WW87 121 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-211ENST00000597968 EIF3GO75821 320 aaKnown RBP eCLIP9.33□□□□□ -0.92
TRIM28-211ENST00000597968 IGKV2D-40P01614 121 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-211ENST00000597968 ORM1P02763 201 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 OR10J4P0C629 311 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 PET100P0DJ07 73 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 TAS2R45P59539 299 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 Q6AWC8 147 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 Q6ZQT7 251 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 Q6ZRN7 208 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-211ENST00000597968 NEGR1Q7Z3B1 354 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 RASL10AQ92737 203 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 SMIM3Q9BZL3 60 aa9.33□□□□□ -0.92
TRIM28-211ENST00000597968 TRGV11A0A075B6L2 103 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 OR7C2O60412 319 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 NXPH4O95158 308 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 MPC2O95563 127 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 KRTAP10-2P60368 255 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 ERVFC1-1P60608 527 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 FHL2Q14192 279 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 TDRG1Q3Y452 100 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 KHDC3LQ587J8 217 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 LYPD5Q6UWN5 251 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 OR10G4Q8NGN3 311 aa9.32□□□□□ -0.92
TRIM28-211ENST00000597968 DEFA1P59665 94 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 DEFA3P59666 94 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 FAM74A1Q5RGS3 127 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 PRR9Q5T870 116 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 FAM159AQ6UWV7 190 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 SH2D6Q7Z4S9 175 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 ATP5SQ99766 215 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 WFDC1Q9HC57 220 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 HSPB11Q9Y547 144 aa9.31□□□□□ -0.92
TRIM28-211ENST00000597968 TRGV4A0A0C4DH28 118 aa9.3□□□□□ -0.92
TRIM28-211ENST00000597968 RANP62826 216 aaKnown RBP9.3□□□□□ -0.92
TRIM28-211ENST00000597968 FFAR4Q5NUL3 377 aa9.3□□□□□ -0.92
TRIM28-211ENST00000597968 PCNPQ8WW12 178 aaKnown RBP9.3□□□□□ -0.92
TRIM28-211ENST00000597968 PHYHIPLQ96FC7 376 aa9.3□□□□□ -0.92
TRIM28-211ENST00000597968 TXNDC17Q9BRA2 123 aa9.3□□□□□ -0.92
TRIM28-211ENST00000597968 SCRT2Q9NQ03 307 aa9.3□□□□□ -0.92
TRIM28-211ENST00000597968 MRPL16Q9NX20 251 aaKnown RBP9.3□□□□□ -0.92
TRIM28-211ENST00000597968 MBD2Q9UBB5 411 aa9.3□□□□□ -0.92
TRIM28-211ENST00000597968 LY96Q9Y6Y9 160 aa9.3□□□□□ -0.92
TRIM28-211ENST00000597968 C9JCJ5 164 aa9.29□□□□□ -0.92
TRIM28-211ENST00000597968 DIRC3C9JPN6 131 aa9.29□□□□□ -0.92
TRIM28-211ENST00000597968 CIDEAO60543 219 aa9.29□□□□□ -0.92
TRIM28-211ENST00000597968 IFNA5P01569 189 aa9.29□□□□□ -0.92
TRIM28-211ENST00000597968 RPL12P30050 165 aaKnown RBP9.29□□□□□ -0.92
TRIM28-211ENST00000597968 SRIP30626 198 aa9.29□□□□□ -0.92
TRIM28-211ENST00000597968 UBE2L3P68036 154 aaKnown RBP9.29□□□□□ -0.92
TRIM28-211ENST00000597968 C10orf126Q8N4M7 172 aa9.29□□□□□ -0.92
TRIM28-211ENST00000597968 SCGB1C1Q8TD33 95 aa9.29□□□□□ -0.92
TRIM28-211ENST00000597968 OTORQ9NRC9 128 aa9.29□□□□□ -0.92
TRIM28-211ENST00000597968 TRAV4A0A0B4J268 109 aa9.28□□□□□ -0.92
TRIM28-211ENST00000597968 K7EQD1 137 aa9.28□□□□□ -0.92
TRIM28-211ENST00000597968 EVI2AP22794 236 aa9.28□□□□□ -0.92
TRIM28-211ENST00000597968 TIRAPP58753 221 aa9.28□□□□□ -0.92
TRIM28-211ENST00000597968 PQLC2Q6ZP29 291 aa9.28□□□□□ -0.92
TRIM28-211ENST00000597968 Q8TAT8 98 aa9.28□□□□□ -0.92
TRIM28-211ENST00000597968 C8orf49Q96NF6 230 aa9.28□□□□□ -0.92
TRIM28-211ENST00000597968 TRAV21A0A0B4J279 112 aa9.27□□□□□ -0.93
TRIM28-211ENST00000597968 SERTM2A0A1B0GWG4 89 aa9.27□□□□□ -0.93
TRIM28-211ENST00000597968 IGHV3-53P01767 116 aa9.27□□□□□ -0.93
TRIM28-211ENST00000597968 DNAH10OSP0CZ25 163 aa9.27□□□□□ -0.93
TRIM28-211ENST00000597968 CMTM2Q8TAZ6 248 aa9.27□□□□□ -0.93
TRIM28-211ENST00000597968 KCNS1Q96KK3 526 aa9.27□□□□□ -0.93
TRIM28-211ENST00000597968 MDFICQ9P1T7 246 aa9.27□□□□□ -0.93
TRIM28-211ENST00000597968 ALG5Q9Y673 324 aa9.27□□□□□ -0.93
TRIM28-211ENST00000597968 M0R2P5 195 aa9.26□□□□□ -0.93
TRIM28-211ENST00000597968 TMEM183BQ1AE95 376 aa9.25□□□□□ -0.93
TRIM28-211ENST00000597968 ACOT6Q3I5F7 207 aaPredicted RBP9.25□□□□□ -0.93
TRIM28-211ENST00000597968 MUC21Q5SSG8 566 aa9.25□□□□□ -0.93
TRIM28-211ENST00000597968 TMEM183AQ8IXX5 376 aa9.25□□□□□ -0.93
TRIM28-211ENST00000597968 ZNF479Q96JC4 524 aa9.25□□□□□ -0.93
TRIM28-211ENST00000597968 HYLS1Q96M11 299 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms