RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 RNF125Q96EQ8 232 aa13.28□□□□□ -0.28
SHKBP1-205ENST00000594973 C21orf62Q9NYP8 219 aa13.28□□□□□ -0.28
SHKBP1-205ENST00000594973 FCGR2BP31994 310 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-205ENST00000594973 BCL6BQ8N143 479 aaPredicted RBP13.27□□□□□ -0.28
SHKBP1-205ENST00000594973 Q9H3A6 140 aa13.27□□□□□ -0.28
SHKBP1-205ENST00000594973 USP9YO00507 2555 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-205ENST00000594973 LINC01548A6NM66 108 aa13.27□□□□□ -0.29
SHKBP1-205ENST00000594973 F8W735 103 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-205ENST00000594973 ATP6V0E1O15342 81 aa13.27□□□□□ -0.29
SHKBP1-205ENST00000594973 RIGQ13278 110 aa13.27□□□□□ -0.29
SHKBP1-205ENST00000594973 OR8A1Q8NGG7 326 aa13.27□□□□□ -0.29
SHKBP1-205ENST00000594973 ZNF843Q8N446 348 aa13.26□□□□□ -0.29
SHKBP1-205ENST00000594973 A0A096LNJ9 63 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 IGHV1-69DA0A0B4J2H0 117 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 A0A1B0GUT8 65 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 K7EQM0 130 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 IGHV1-69P01742 117 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 SHANK2-AS3Q9BTD1 123 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 G3V318 75 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 IGHV4-38-2P0DP08 117 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 PRB4P10163 310 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 EXOC3-AS1Q8N2X6 119 aa13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 PHLDA1Q8WV24 401 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-205ENST00000594973 C17orf77Q96MU5 243 aa13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 SPAG8Q99932 426 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 ANKRD17O75179 2603 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 IGHV3-35A0A0C4DH35 117 aa13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 E9PLD3 99 aa13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 H3BRN7 92 aa13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 GEMIN7Q9H840 131 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 MRPL16Q9NX20 251 aaKnown RBP13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 TMEM14CQ9P0S9 112 aa13.24□□□□□ -0.29
SHKBP1-205ENST00000594973 ZANQ9Y493 2812 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 WI2-2373I1.2A0A1W2PRP0 233 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 COL8A1P27658 744 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 CACNG7P62955 275 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 PCP2Q8IVA1 136 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 ZNF414Q96IQ9 312 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 ABCA12Q86UK0 2595 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 IGHV3OR16-8A0A075B7F1 116 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 A6NJY4 79 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 WFDC2Q14508 124 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 C15orf32Q32M92 178 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 PTPN13Q12923 2485 aa13.23□□□□□ -0.29
SHKBP1-205ENST00000594973 TCRAP04437 139 aa13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 MSMBP08118 114 aa13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 NMUP48645 174 aa13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 FXYD2P54710 66 aa13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 C5orf56Q8N8D9 126 aa13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 FAM110DQ8TAY7 271 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 ZNF502Q8TBZ5 544 aa13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.22□□□□□ -0.293e-7■■□□□ 13.4
SHKBP1-205ENST00000594973 CTSGP08311 255 aa13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 GCSHP23434 173 aa13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 SRSF1Q07955 248 aaKnown RBP eCLIP13.22□□□□□ -0.29
SHKBP1-205ENST00000594973 TRAV8-1A0A0A6YYK1 113 aa13.21□□□□□ -0.29
SHKBP1-205ENST00000594973 COX6B1P14854 86 aa13.21□□□□□ -0.29
SHKBP1-205ENST00000594973 IFI27P40305 119 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-205ENST00000594973 TM2D2Q9BX73 214 aa13.21□□□□□ -0.29
SHKBP1-205ENST00000594973 LINC00527Q9UJ94 153 aa13.21□□□□□ -0.29
SHKBP1-205ENST00000594973 TRBV19A0A075B6N1 114 aa13.21□□□□□ -0.3
SHKBP1-205ENST00000594973 HBDP02042 147 aa13.21□□□□□ -0.3
SHKBP1-205ENST00000594973 CFAP161Q6P656 301 aa13.21□□□□□ -0.3
SHKBP1-205ENST00000594973 OTORQ9NRC9 128 aa13.21□□□□□ -0.3
SHKBP1-205ENST00000594973 HIF1ANQ9NWT6 349 aa13.21□□□□□ -0.3
SHKBP1-205ENST00000594973 LY6EQ16553 131 aa13.2□□□□□ -0.3
SHKBP1-205ENST00000594973 Q6AWC8 147 aa13.2□□□□□ -0.3
SHKBP1-205ENST00000594973 ZNF493Q6ZR52 646 aa13.2□□□□□ -0.3
SHKBP1-205ENST00000594973 U3KQK5 164 aa13.2□□□□□ -0.3
SHKBP1-205ENST00000594973 TRBV6-1A0A0K0K1D8 114 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 GOLT1AQ6ZVE7 132 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 Q86TA4 180 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 ZNF418Q8TF45 676 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 IFI27L1Q96BM0 104 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 C18orf15Q96N68 181 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 TSPAN13O95857 204 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 ARMS2P0C7Q2 107 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 TMEM190Q8WZ59 177 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 CHAC1Q9BUX1 264 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 MOB4Q9Y3A3 225 aa13.19□□□□□ -0.3
SHKBP1-205ENST00000594973 CSPG4Q6UVK1 2322 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 FBLL1A6NHQ2 334 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 CLEC3BP05452 202 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 FAM106AQ4KMX7 169 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 OR11H12B2RN74 326 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 IGLL5B9A064 214 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 SCGB2A1O75556 95 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 LOXL1Q08397 574 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 ETDBQ3ZM63 59 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 OR11H1Q8NG94 326 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 OR11H2Q8NH07 326 aa13.18□□□□□ -0.3
SHKBP1-205ENST00000594973 MRPS12O15235 138 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-205ENST00000594973 TM4SF20Q53R12 229 aa13.17□□□□□ -0.3
SHKBP1-205ENST00000594973 CEND1Q8N111 149 aa13.17□□□□□ -0.3
SHKBP1-205ENST00000594973 B4DSR2 109 aa13.17□□□□□ -0.3
SHKBP1-205ENST00000594973 H3BUX3 64 aa13.17□□□□□ -0.3
SHKBP1-205ENST00000594973 AVPP01185 164 aa13.17□□□□□ -0.3
SHKBP1-205ENST00000594973 HLA-DRB4P13762 266 aa13.17□□□□□ -0.3
SHKBP1-205ENST00000594973 SIGLEC15Q6ZMC9 328 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms