RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-215	ENST00000580642	ZFAND2A	Q8N6M9	145 aa		11.3	□□□□□ -0.6
SS18-215	ENST00000580642	OR10G8	Q8NGN5	311 aa		11.3	□□□□□ -0.6
SS18-215	ENST00000580642	IMMP2L	Q96T52	175 aa		11.3	□□□□□ -0.6
SS18-215	ENST00000580642	TRAV21	A0A0B4J279	112 aa		11.29	□□□□□ -0.6
SS18-215	ENST00000580642	KNCN	A6PVL3	124 aa		11.29	□□□□□ -0.6
SS18-215	ENST00000580642	GPX1	P07203	203 aa		11.29	□□□□□ -0.6
SS18-215	ENST00000580642	RNF212	Q495C1	297 aa		11.29	□□□□□ -0.6
SS18-215	ENST00000580642		Q6AWC8	147 aa		11.29	□□□□□ -0.6
SS18-215	ENST00000580642	MORN3	Q6PF18	240 aa	Predicted RBP	11.29	□□□□□ -0.6
SS18-215	ENST00000580642	TRPT1	Q86TN4	253 aa	Known RBP	11.29	□□□□□ -0.6
SS18-215	ENST00000580642	C20orf144	Q9BQM9	153 aa		11.29	□□□□□ -0.6
SS18-215	ENST00000580642	TUBA4B	Q9H853	241 aa		11.29	□□□□□ -0.6
SS18-215	ENST00000580642	FAM231B	A6NCW3	169 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642		H7BYZ3	331 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642		P01737	135 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642	DEFB1	P60022	68 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642	OR5I1	Q13606	314 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642	NHLRC2	Q8NBF2	726 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642	NUDT10	Q8NFP7	164 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642	NUDT11	Q96G61	164 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642	C8orf49	Q96NF6	230 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642	RPS10P5	Q9NQ39	176 aa		11.28	□□□□□ -0.6
SS18-215	ENST00000580642	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	11.28	□□□□□ -0.6
SS18-215	ENST00000580642	VWF	P04275	2813 aa		11.27	□□□□□ -0.6
SS18-215	ENST00000580642	XKRY2	A2RUG3	117 aa		11.27	□□□□□ -0.61
SS18-215	ENST00000580642	CRIP1	P50238	77 aa		11.27	□□□□□ -0.61
SS18-215	ENST00000580642	RPS20	P60866	119 aa	Known RBP	11.27	□□□□□ -0.61
SS18-215	ENST00000580642	SMCO4	Q9NRQ5	59 aa		11.27	□□□□□ -0.61
SS18-215	ENST00000580642	GATC	O43716	136 aa	Known RBP	11.26	□□□□□ -0.61
SS18-215	ENST00000580642	SH2D1A	O60880	128 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642	CXCL1	P09341	107 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642	SAMD5	Q5TGI4	173 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642	PRR27	Q6MZM9	219 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642		Q8N1Y9	231 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642	C1QTNF4	Q9BXJ3	329 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642	GFRA4	Q9GZZ7	299 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642	RPP21	Q9H633	154 aa	Known RBP	11.26	□□□□□ -0.61
SS18-215	ENST00000580642		V9GYV3	84 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642	ANK2	Q01484	3957 aa		11.26	□□□□□ -0.61
SS18-215	ENST00000580642	C7orf71	A4D174	169 aa		11.25	□□□□□ -0.61
SS18-215	ENST00000580642		A8MWL6	223 aa		11.25	□□□□□ -0.61
SS18-215	ENST00000580642	LINC01559	Q495D7	138 aa		11.25	□□□□□ -0.61
SS18-215	ENST00000580642	OXLD1	Q5BKU9	147 aa		11.25	□□□□□ -0.61
SS18-215	ENST00000580642	ATRAID	Q6UW56	229 aa		11.25	□□□□□ -0.61
SS18-215	ENST00000580642	LINC00322	Q6ZN03	302 aa	Predicted RBP	11.25	□□□□□ -0.61
SS18-215	ENST00000580642	BTF3L4	Q96K17	158 aa		11.25	□□□□□ -0.61
SS18-215	ENST00000580642	RNASE7	Q9H1E1	156 aa	Known RBP	11.25	□□□□□ -0.61
SS18-215	ENST00000580642	NOTCH3	Q9UM47	2321 aa		11.25	□□□□□ -0.61
SS18-215	ENST00000580642	TRAV9-1	A0A075B6T8	112 aa		11.24	□□□□□ -0.61
SS18-215	ENST00000580642	KIR2DL5B	A0A0G2JN68	375 aa		11.24	□□□□□ -0.61
SS18-215	ENST00000580642	KIR2DL5B	A0A0G2JPC4	375 aa		11.24	□□□□□ -0.61
SS18-215	ENST00000580642	ZNF705G	A8MUZ8	300 aa	Predicted RBP	11.24	□□□□□ -0.61
SS18-215	ENST00000580642	ZNF80	P51504	273 aa	Predicted RBP	11.24	□□□□□ -0.61
SS18-215	ENST00000580642	KIR2DL5A	Q8N109	375 aa		11.24	□□□□□ -0.61
SS18-215	ENST00000580642	KIR2DL5B	Q8NHK3	375 aa		11.24	□□□□□ -0.61
SS18-215	ENST00000580642	KCNS1	Q96KK3	526 aa		11.24	□□□□□ -0.61
SS18-215	ENST00000580642	SORL1	Q92673	2214 aa		11.24	□□□□□ -0.61
SS18-215	ENST00000580642	TMEM189	A5PLL7	270 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	RBMY1B	A6NDE4	496 aa	Known RBP	11.23	□□□□□ -0.61
SS18-215	ENST00000580642	RBMY1E	A6NEQ0	496 aa	Known RBP	11.23	□□□□□ -0.61
SS18-215	ENST00000580642		A8MZ25	164 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	ZNF324	O75467	553 aa	Predicted RBP	11.23	□□□□□ -0.61
SS18-215	ENST00000580642	IGKV3-20	P01619	116 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	RBMY1D	P0C7P1	496 aa	Known RBP	11.23	□□□□□ -0.61
SS18-215	ENST00000580642	PRB4	P10163	310 aa	Predicted RBP	11.23	□□□□□ -0.61
SS18-215	ENST00000580642	S100P	P25815	95 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	RNASE4	P34096	147 aa	Known RBP	11.23	□□□□□ -0.61
SS18-215	ENST00000580642	FOXA3	P55318	350 aa	Predicted RBP	11.23	□□□□□ -0.61
SS18-215	ENST00000580642	ZNF124	Q15973	351 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	TDRG1	Q3Y452	100 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	GFI1B	Q5VTD9	330 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	KCNIP4	Q6PIL6	250 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	TMEM256	Q8N2U0	113 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	OR2D3	Q8NGH3	330 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	TSKU	Q8WUA8	353 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	LINC00467	Q9BRT7	94 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	IL36B	Q9NZH7	164 aa		11.23	□□□□□ -0.61
SS18-215	ENST00000580642	TRRAP	Q9Y4A5	3859 aa		11.22	□□□□□ -0.61
SS18-215	ENST00000580642	INS	P01308	110 aa		11.22	□□□□□ -0.61
SS18-215	ENST00000580642	RPL19	P84098	196 aa	Known RBP	11.22	□□□□□ -0.61
SS18-215	ENST00000580642	SPINK13	Q1W4C9	94 aa		11.22	□□□□□ -0.61
SS18-215	ENST00000580642	KPRP	Q5T749	579 aa	Predicted RBP	11.22	□□□□□ -0.61
SS18-215	ENST00000580642	PRR9	Q5T870	116 aa		11.22	□□□□□ -0.61
SS18-215	ENST00000580642	DEFB125	Q8N687	156 aa		11.22	□□□□□ -0.61
SS18-215	ENST00000580642		A0A1W2PPQ1	181 aa		11.21	□□□□□ -0.61
SS18-215	ENST00000580642	SMIM27	A0A1W2PRY6	76 aa		11.21	□□□□□ -0.61
SS18-215	ENST00000580642		M0R2Z0	102 aa		11.21	□□□□□ -0.61
SS18-215	ENST00000580642	CRX	O43186	299 aa	Predicted RBP	11.21	□□□□□ -0.61
SS18-215	ENST00000580642	ORM1	P02763	201 aa		11.21	□□□□□ -0.61
SS18-215	ENST00000580642	BTN1A1	Q13410	526 aa		11.21	□□□□□ -0.61
SS18-215	ENST00000580642	DNLZ	Q5SXM8	178 aa		11.21	□□□□□ -0.61
SS18-215	ENST00000580642	PYGO2	Q9BRQ0	406 aa		11.21	□□□□□ -0.61
SS18-215	ENST00000580642	SRD5A3	Q9H8P0	318 aa		11.21	□□□□□ -0.61
SS18-215	ENST00000580642	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	11.2	□□□□□ -0.62
SS18-215	ENST00000580642	UBE2C	O00762	179 aa		11.2	□□□□□ -0.62
SS18-215	ENST00000580642	APOC4	P55056	127 aa		11.2	□□□□□ -0.62
SS18-215	ENST00000580642	FAM159A	Q6UWV7	190 aa		11.2	□□□□□ -0.62
SS18-215	ENST00000580642	CSTL1	Q9H114	145 aa		11.2	□□□□□ -0.62
SS18-215	ENST00000580642	NAT8B	Q9UHF3	227 aa		11.2	□□□□□ -0.62
SS18-215	ENST00000580642	TRAV12-3	A0A0B4J271	114 aa		11.19	□□□□□ -0.62

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