RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CBLN2Q8IUK8 224 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 APRG1Q8IVJ8 170 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 OR4B1Q8NGF8 309 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 V9GYV3 84 aa10.15□□□□□ -0.78
CCDC40-209ENST00000573474 COL6A5A8TX70 2615 aa10.15□□□□□ -0.79
CCDC40-209ENST00000573474 VWFP04275 2813 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 FABP5P3A8MUU1 101 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 ZNF705GA8MUZ8 300 aaPredicted RBP10.14□□□□□ -0.79
CCDC40-209ENST00000573474 WIPF1O43516 503 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 SH2D1AO60880 128 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 TSPOP30536 169 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 ZNF80P51504 273 aaPredicted RBP10.14□□□□□ -0.79
CCDC40-209ENST00000573474 ZFAND2AQ8N6M9 145 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 CLUHP3Q96NS8 147 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 IMMP2LQ96T52 175 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 STAB1Q9NY15 2570 aa10.14□□□□□ -0.79
CCDC40-209ENST00000573474 IGKV3-20P01619 116 aa10.13□□□□□ -0.79
CCDC40-209ENST00000573474 GPX1P07203 203 aa10.13□□□□□ -0.79
CCDC40-209ENST00000573474 CD7P09564 240 aa10.13□□□□□ -0.79
CCDC40-209ENST00000573474 ZNF124Q15973 351 aa10.13□□□□□ -0.79
CCDC40-209ENST00000573474 PRR31Q5SQ13 230 aa10.13□□□□□ -0.79
CCDC40-209ENST00000573474 MDFIQ99750 246 aa10.13□□□□□ -0.79
CCDC40-209ENST00000573474 RPP21Q9H633 154 aaKnown RBP10.13□□□□□ -0.79
CCDC40-209ENST00000573474 C19orf73Q9NVV2 129 aa10.13□□□□□ -0.79
CCDC40-209ENST00000573474 KLLNB2CW77 178 aa10.12□□□□□ -0.79
CCDC40-209ENST00000573474 PFN1P07737 140 aaKnown RBP10.12□□□□□ -0.79
CCDC40-209ENST00000573474 S100PP25815 95 aa10.12□□□□□ -0.79
CCDC40-209ENST00000573474 RNASE4P34096 147 aaKnown RBP10.12□□□□□ -0.79
CCDC40-209ENST00000573474 CT83Q5H943 113 aa10.12□□□□□ -0.79
CCDC40-209ENST00000573474 AMTNQ6UX39 209 aa10.12□□□□□ -0.79
CCDC40-209ENST00000573474 GTSCR1Q86UQ5 136 aa10.12□□□□□ -0.79
CCDC40-209ENST00000573474 STHQ8IWL8 128 aa10.12□□□□□ -0.79
CCDC40-209ENST00000573474 IL36BQ9NZH7 164 aa10.12□□□□□ -0.79
CCDC40-209ENST00000573474 SORL1Q92673 2214 aa10.11□□□□□ -0.79
CCDC40-209ENST00000573474 TRAV21A0A0B4J279 112 aa10.11□□□□□ -0.79
CCDC40-209ENST00000573474 A8MWL6 223 aa10.11□□□□□ -0.79
CCDC40-209ENST00000573474 J3KRW8 73 aa10.11□□□□□ -0.79
CCDC40-209ENST00000573474 PRR9Q5T870 116 aa10.11□□□□□ -0.79
CCDC40-209ENST00000573474 KCNIP4Q6PIL6 250 aa10.11□□□□□ -0.79
CCDC40-209ENST00000573474 OR2D3Q8NGH3 330 aa10.11□□□□□ -0.79
CCDC40-209ENST00000573474 TMEM189A5PLL7 270 aa10.1□□□□□ -0.79
CCDC40-209ENST00000573474 CDKN1BP46527 198 aa10.1□□□□□ -0.79
CCDC40-209ENST00000573474 Q6AWC8 147 aa10.1□□□□□ -0.79
CCDC40-209ENST00000573474 TSKUQ8WUA8 353 aa10.1□□□□□ -0.79
CCDC40-209ENST00000573474 URGCP-MRPS24S4R325 110 aa10.1□□□□□ -0.79
CCDC40-209ENST00000573474 SMIM27A0A1W2PRY6 76 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 XKRY2A2RUG3 117 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 C7orf71A4D174 169 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 RBMY1BA6NDE4 496 aaKnown RBP10.09□□□□□ -0.79
CCDC40-209ENST00000573474 RBMY1EA6NEQ0 496 aaKnown RBP10.09□□□□□ -0.79
CCDC40-209ENST00000573474 M0R2Z0 102 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 CA1P00915 261 aaPredicted RBP10.09□□□□□ -0.79
CCDC40-209ENST00000573474 ORM1P02763 201 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 RBMY1DP0C7P1 496 aaKnown RBP10.09□□□□□ -0.79
CCDC40-209ENST00000573474 RPS20P60866 119 aaKnown RBP10.09□□□□□ -0.79
CCDC40-209ENST00000573474 KIR3DS1Q14943 382 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 ELOBQ15370 118 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 SPINK13Q1W4C9 94 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 LINC01559Q495D7 138 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 TRPT1Q86TN4 253 aaKnown RBP10.09□□□□□ -0.79
CCDC40-209ENST00000573474 YPEL4Q96NS1 127 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 GFRA4Q9GZZ7 299 aa10.09□□□□□ -0.79
CCDC40-209ENST00000573474 TRAV9-1A0A075B6T8 112 aa10.08□□□□□ -0.8
CCDC40-209ENST00000573474 FAM231BA6NCW3 169 aa10.08□□□□□ -0.8
CCDC40-209ENST00000573474 COLCA2A8K830 154 aa10.08□□□□□ -0.8
CCDC40-209ENST00000573474 AMBPP02760 352 aa10.08□□□□□ -0.8
CCDC40-209ENST00000573474 RIPPLY3P57055 190 aa10.08□□□□□ -0.8
CCDC40-209ENST00000573474 FAM3BP58499 235 aaPredicted RBP10.08□□□□□ -0.8
CCDC40-209ENST00000573474 RPL19P84098 196 aaKnown RBP10.08□□□□□ -0.8
CCDC40-209ENST00000573474 GFI1BQ5VTD9 330 aa10.08□□□□□ -0.8
CCDC40-209ENST00000573474 ZMAT5Q9UDW3 170 aaKnown RBP10.08□□□□□ -0.8
CCDC40-209ENST00000573474 TRRAPQ9Y4A5 3859 aa10.08□□□□□ -0.8
CCDC40-209ENST00000573474 TRAV12-3A0A0B4J271 114 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 ZNF324O75467 553 aaPredicted RBP10.07□□□□□ -0.8
CCDC40-209ENST00000573474 TCL1AP56279 114 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 FXYD7P58549 80 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 NUTF2P61970 127 aaKnown RBP10.07□□□□□ -0.8
CCDC40-209ENST00000573474 OXLD1Q5BKU9 147 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 BTF3L4Q96K17 158 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 NEU1Q99519 415 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 WFDC10AQ9H1F0 79 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 C11orf21Q9P2W6 132 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 NAT8BQ9UHF3 227 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 ANK2Q01484 3957 aa10.07□□□□□ -0.8
CCDC40-209ENST00000573474 NOTCH3Q9UM47 2321 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 TRBV24-1A0A075B6N3 115 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 TRAV12-2A0A075B6T6 113 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 TMSB15BA0A087X1C1 80 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 TGIF2-C20orf24A0A0A6YYL0 155 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 IGKV3D-20A0A0C4DH25 116 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 A0A1W2PPQ1 181 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 GZMBP10144 247 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 FOXA3P55318 350 aaPredicted RBP10.06□□□□□ -0.8
CCDC40-209ENST00000573474 Q6ZQT7 251 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 DEFB125Q8N687 156 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.06□□□□□ -0.8
CCDC40-209ENST00000573474 PYGO2Q9BRQ0 406 aa10.06□□□□□ -0.8
CCDC40-209ENST00000573474 AGRNO00468 2067 aa10.05□□□□□ -0.8
CCDC40-209ENST00000573474 HIGD1CA8MV81 97 aa10.05□□□□□ -0.8
CCDC40-209ENST00000573474 CRXO43186 299 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms