RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	IGKV3D-20	A0A0C4DH25	116 aa		13.19	□□□□□ -0.3
VPS53-215	ENST00000573028		K7ENP7	123 aa		13.19	□□□□□ -0.3
VPS53-215	ENST00000573028	BUB3	O43684	328 aa		13.19	□□□□□ -0.3
VPS53-215	ENST00000573028	FCER1G	P30273	86 aa		13.19	□□□□□ -0.3
VPS53-215	ENST00000573028		K7ERJ3	54 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	PPBP	P02775	128 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	ODF1	Q14990	250 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	SPCS1	Q9Y6A9	102 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	TMEM78	Q5T7P6	136 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	ZC2HC1B	Q5TFG8	222 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028		Q8N6K4	173 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	KLK15	Q9H2R5	256 aa		13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	NXT2	Q9NPJ8	142 aa	Known RBP	13.18	□□□□□ -0.3
VPS53-215	ENST00000573028	FXYD2	P54710	66 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	SPANXN1	Q5VSR9	72 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	COX8C	Q7Z4L0	72 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	ZNF502	Q8TBZ5	544 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	IGHV3OR16-10	A0A075B7F0	116 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	IGKC	P01834	107 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	SMIM15	Q7Z3B0	74 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	TRAV40	A0A0B4J280	105 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	TMEM8B	A6NDV4	472 aa		13.17	□□□□□ -0.3
VPS53-215	ENST00000573028	SMIM17	P0DL12	118 aa		13.16	□□□□□ -0.3
VPS53-215	ENST00000573028	ZFAND3	Q9H8U3	227 aa		13.16	□□□□□ -0.3
VPS53-215	ENST00000573028		K7EP34	96 aa		13.16	□□□□□ -0.3
VPS53-215	ENST00000573028	TMEM219	Q86XT9	240 aa		13.16	□□□□□ -0.3
VPS53-215	ENST00000573028	NCOR2	Q9Y618	2525 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	ADORA2A-AS1	P86434	159 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	UFSP1	Q6NVU6	142 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028		H3BVH4	76 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	SAA4	P35542	130 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	EFNA4	P52798	201 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	LINC01559	Q495D7	138 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	CCDC140	Q96MF4	163 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	CHAC1	Q9BUX1	264 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	MRPL35	Q9NZE8	188 aa	Known RBP	13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	HHLA3	Q9XRX5	114 aa		13.15	□□□□□ -0.3
VPS53-215	ENST00000573028	SMIM13	P0DJ93	91 aa		13.15	□□□□□ -0.31
VPS53-215	ENST00000573028	FAM110D	Q8TAY7	271 aa	Predicted RBP	13.15	□□□□□ -0.31
VPS53-215	ENST00000573028	NHP2	Q9NX24	153 aa	Known RBP	13.15	□□□□□ -0.31
VPS53-215	ENST00000573028	CELSR1	Q9NYQ6	3014 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	IGKV3-7	A0A075B6H7	116 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028		A0A1W2PPM0	123 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	DEFB1	P60022	68 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	MINOS1	Q5TGZ0	78 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	MINOS1-NBL1	R4GNA1	71 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	SIVA1	O15304	175 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	DPM2	O94777	84 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	FABP2	P12104	132 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	C8orf86	Q6ZUL3	223 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	METTL26	Q96S19	204 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	HIF1AN	Q9NWT6	349 aa		13.14	□□□□□ -0.31
VPS53-215	ENST00000573028	HIVEP3	Q5T1R4	2406 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	CLPSL1	A2RUU4	121 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	SAMD5	Q5TGI4	173 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	MYOZ3	Q8TDC0	251 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	SPG11	Q96JI7	2443 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	IGF1	P05019	195 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	C16orf92	Q96LL3	132 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	SLC50A1	Q9BRV3	221 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	CNFN	Q9BYD5	112 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	CHD8	Q9HCK8	2581 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	TRBV25-1	A0A075B6N4	114 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	RPL24	P83731	157 aa	Known RBP	13.13	□□□□□ -0.31
VPS53-215	ENST00000573028		Q8N8P6	123 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028	UBTD1	Q9HAC8	227 aa		13.13	□□□□□ -0.31
VPS53-215	ENST00000573028		M0R381	172 aa		13.12	□□□□□ -0.31
VPS53-215	ENST00000573028	EBI3	Q14213	229 aa		13.12	□□□□□ -0.31
VPS53-215	ENST00000573028	FBXL19-AS1	Q494R0	122 aa		13.12	□□□□□ -0.31
VPS53-215	ENST00000573028	ARL6IP6	Q8N6S5	226 aa		13.12	□□□□□ -0.31
VPS53-215	ENST00000573028	TRAV8-2	A0A0B4J237	113 aa		13.12	□□□□□ -0.31
VPS53-215	ENST00000573028		A0A1W2PPR1	153 aa		13.12	□□□□□ -0.31
VPS53-215	ENST00000573028	OOSP1	A8MZH6	123 aa		13.12	□□□□□ -0.31
VPS53-215	ENST00000573028	C11orf71	Q6IPW1	123 aa		13.12	□□□□□ -0.31
VPS53-215	ENST00000573028	DEFB104A	Q8WTQ1	72 aa		13.11	□□□□□ -0.31
VPS53-215	ENST00000573028	RPL11	P62913	178 aa	Known RBP	13.11	□□□□□ -0.31
VPS53-215	ENST00000573028	SIRPD	Q9H106	197 aa		13.11	□□□□□ -0.31
VPS53-215	ENST00000573028	LAGE3	Q14657	143 aa		13.11	□□□□□ -0.31
VPS53-215	ENST00000573028	EEF1AKMT3	Q96AZ1	226 aa		13.11	□□□□□ -0.31
VPS53-215	ENST00000573028	SPTBN4	Q9H254	2564 aa		13.1	□□□□□ -0.31
VPS53-215	ENST00000573028	RAB9A	P51151	201 aa		13.1	□□□□□ -0.31
VPS53-215	ENST00000573028	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	13.1	□□□□□ -0.31	9e-6	■■□□□ 12.8
VPS53-215	ENST00000573028	AGRN	O00468	2067 aa		13.1	□□□□□ -0.31
VPS53-215	ENST00000573028	ATP5L	O75964	103 aa		13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	C1orf122	Q6ZSJ8	110 aa		13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	MAPKAPK5-AS1	Q8N8E1	139 aa		13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	COL12A1	Q99715	3063 aa		13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	IGHV7-4-1	A0A0J9YVY3	117 aa		13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	S100A4	P26447	101 aa	Known RBP	13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	SRSF2	Q01130	221 aa	Known RBP	13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	PRR9	Q5T870	116 aa		13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	GLMP	Q8WWB7	406 aa		13.09	□□□□□ -0.31
VPS53-215	ENST00000573028	ZFHX3	Q15911	3703 aa		13.08	□□□□□ -0.32
VPS53-215	ENST00000573028	CSTL1	Q9H114	145 aa		13.08	□□□□□ -0.32
VPS53-215	ENST00000573028	IGLV2-18	A0A075B6J9	118 aa		13.08	□□□□□ -0.32
VPS53-215	ENST00000573028	NRAC	Q8N912	160 aa		13.08	□□□□□ -0.32
VPS53-215	ENST00000573028	PSMG3-AS1	Q96PY0	264 aa		13.08	□□□□□ -0.32
VPS53-215	ENST00000573028	BPESC1	Q9GZL8	116 aa		13.08	□□□□□ -0.32
VPS53-215	ENST00000573028	ZMAT4	Q9H898	229 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms