RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CRYBA4P53673 196 aa11.7□□□□□ -0.54
CLN3-216ENST00000565316 ZNF266Q14584 549 aa11.7□□□□□ -0.54
CLN3-216ENST00000565316 LYPD1Q8N2G4 141 aa11.7□□□□□ -0.54
CLN3-216ENST00000565316 HHLA3Q9XRX5 114 aa11.7□□□□□ -0.54
CLN3-216ENST00000565316 IGHV3-53P01767 116 aa11.69□□□□□ -0.54
CLN3-216ENST00000565316 LYPD5Q6UWN5 251 aa11.69□□□□□ -0.54
CLN3-216ENST00000565316 Q8TAT8 98 aa11.69□□□□□ -0.54
CLN3-216ENST00000565316 ARPC5LQ9BPX5 153 aa11.69□□□□□ -0.54
CLN3-216ENST00000565316 SCRT2Q9NQ03 307 aa11.69□□□□□ -0.54
CLN3-216ENST00000565316 CYCSP99999 105 aaKnown RBP11.68□□□□□ -0.54
CLN3-216ENST00000565316 ZNF415Q09FC8 603 aa11.68□□□□□ -0.54
CLN3-216ENST00000565316 MRPL23Q16540 153 aaKnown RBP11.68□□□□□ -0.54
CLN3-216ENST00000565316 IQCF2Q8IXL9 164 aa11.68□□□□□ -0.54
CLN3-216ENST00000565316 S100ZQ8WXG8 99 aa11.68□□□□□ -0.54
CLN3-216ENST00000565316 C8orf49Q96NF6 230 aa11.68□□□□□ -0.54
CLN3-216ENST00000565316 CSN1S1P47710 185 aa11.67□□□□□ -0.54
CLN3-216ENST00000565316 RANP62826 216 aaKnown RBP11.67□□□□□ -0.54
CLN3-216ENST00000565316 MDFICQ9P1T7 246 aa11.67□□□□□ -0.54
CLN3-216ENST00000565316 LENEPQ9Y5L5 61 aa11.67□□□□□ -0.54
CLN3-216ENST00000565316 C17orf112F2Z3M2 114 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 OR7C2O60412 319 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 PRAF2O60831 178 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 LRRC37A5PQ49AS3 106 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 Q6AWC8 147 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 ENKURQ8TC29 256 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 RASL10AQ92737 203 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 ATP5SQ99766 215 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 PGPEP1Q9NXJ5 209 aa11.66□□□□□ -0.54
CLN3-216ENST00000565316 H2BFSP57053 126 aa11.65□□□□□ -0.54
CLN3-216ENST00000565316 NEGR1Q7Z3B1 354 aa11.65□□□□□ -0.54
CLN3-216ENST00000565316 OR10G4Q8NGN3 311 aa11.65□□□□□ -0.54
CLN3-216ENST00000565316 SPXQ9BT56 116 aa11.65□□□□□ -0.54
CLN3-216ENST00000565316 DIRC3C9JPN6 131 aa11.64□□□□□ -0.55
CLN3-216ENST00000565316 UPK1BO75841 260 aa11.64□□□□□ -0.55
CLN3-216ENST00000565316 UBE2L3P68036 154 aaKnown RBP11.64□□□□□ -0.55
CLN3-216ENST00000565316 MUC21Q5SSG8 566 aa11.64□□□□□ -0.55
CLN3-216ENST00000565316 NFE4Q86UQ8 179 aa11.64□□□□□ -0.55
CLN3-216ENST00000565316 TMED6Q8WW62 240 aa11.64□□□□□ -0.55
CLN3-216ENST00000565316 TNFRSF18Q9Y5U5 241 aa11.64□□□□□ -0.55
CLN3-216ENST00000565316 TRGV4A0A0C4DH28 118 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 K7EP13 123 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 K7EQD1 137 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 ERVFC1-1P60608 527 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 IFITM3Q01628 133 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 TDRG1Q3Y452 100 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 KHDC3LQ587J8 217 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 FFAR4Q5NUL3 377 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 CDPF1Q6NVV7 123 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 PPP1R1CQ8WVI7 109 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 ZNF479Q96JC4 524 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 HSPB11Q9Y547 144 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 FAT1Q14517 4588 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 VPS13BQ7Z7G8 4022 aa11.63□□□□□ -0.55
CLN3-216ENST00000565316 TRGV11A0A075B6L2 103 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 TRAV9-2A0A087WT02 112 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 INMT-MINDY4F8WBC2 141 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 EREGO14944 169 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 SFTA3P0C7M3 94 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 TAS2R45P59539 299 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 TMEM183BQ1AE95 376 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 FAM159AQ6UWV7 190 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 TMEM183AQ8IXX5 376 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 HERC1Q15751 4861 aa11.62□□□□□ -0.55
CLN3-216ENST00000565316 MPC2O95563 127 aa11.61□□□□□ -0.55
CLN3-216ENST00000565316 ORM1P02763 201 aa11.61□□□□□ -0.55
CLN3-216ENST00000565316 SRIP30626 198 aa11.61□□□□□ -0.55
CLN3-216ENST00000565316 MARVELD1Q9BSK0 173 aa11.61□□□□□ -0.55
CLN3-216ENST00000565316 OTORQ9NRC9 128 aa11.61□□□□□ -0.55
CLN3-216ENST00000565316 LY96Q9Y6Y9 160 aa11.61□□□□□ -0.55
CLN3-216ENST00000565316 GYPEP15421 78 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 ARL6IP6Q8N6S5 226 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 SCGB1C1Q8TD33 95 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 A0A087WTM6 91 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 TRAV4A0A0B4J268 109 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 IFNA5P01569 189 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 DNAH10OSP0CZ25 163 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 PET100P0DJ07 73 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 RPL12P30050 165 aaKnown RBP11.6□□□□□ -0.55
CLN3-216ENST00000565316 WFDC10BQ8IUB3 73 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 PCNPQ8WW12 178 aaKnown RBP11.6□□□□□ -0.55
CLN3-216ENST00000565316 HYLS1Q96M11 299 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 MSRB1Q9NZV6 116 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 MBD2Q9UBB5 411 aa11.6□□□□□ -0.55
CLN3-216ENST00000565316 IGHV3-16A0A0C4DH30 117 aa11.59□□□□□ -0.55
CLN3-216ENST00000565316 PGPA6NDG6 321 aa11.59□□□□□ -0.55
CLN3-216ENST00000565316 A6NHS1 94 aa11.59□□□□□ -0.55
CLN3-216ENST00000565316 FUSP35637 526 aaKnown RBP eCLIP11.59□□□□□ -0.55
CLN3-216ENST00000565316 XGP55808 180 aa11.59□□□□□ -0.55
CLN3-216ENST00000565316 PTTG2Q9NZH5 202 aa11.59□□□□□ -0.55
CLN3-216ENST00000565316 C9JCJ5 164 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 M0R2P5 195 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 GNRH2O43555 120 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 EIF3GO75821 320 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLN3-216ENST00000565316 EVI2AP22794 236 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 PQLC2Q6ZP29 291 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 CMTM2Q8TAZ6 248 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 TVP23CQ96ET8 276 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 TXNDC17Q9BRA2 123 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 SMIM3Q9BZL3 60 aa11.58□□□□□ -0.56
CLN3-216ENST00000565316 WFDC1Q9HC57 220 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms