RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 RRN3P1Q2M238 152 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 ZNF575Q86XF7 245 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 FAM213BQ8TBF2 198 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 PPP1R14DQ9NXH3 145 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 C11orf21Q9P2W6 132 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 EPDR1Q9UM22 224 aa6.53□□□□□ -1.36
VPS35-206ENST00000565228 DNAH10Q8IVF4 4471 aa6.52□□□□□ -1.36
VPS35-206ENST00000565228 MUC4Q99102 2169 aa6.52□□□□□ -1.36
VPS35-206ENST00000565228 A0A1W2PRE2 83 aa6.52□□□□□ -1.37
VPS35-206ENST00000565228 HBE1P02100 147 aa6.52□□□□□ -1.37
VPS35-206ENST00000565228 TPT1P13693 172 aaKnown RBP6.52□□□□□ -1.37
VPS35-206ENST00000565228 LEPP41159 167 aa6.52□□□□□ -1.37
VPS35-206ENST00000565228 TMEM167BQ9NRX6 74 aa6.52□□□□□ -1.37
VPS35-206ENST00000565228 APLNQ9ULZ1 77 aa6.52□□□□□ -1.37
VPS35-206ENST00000565228 NACAE9PAV3 2078 aa6.52□□□□□ -1.37
VPS35-206ENST00000565228 LCE6AA0A183 80 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 H7BYZ3 331 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 PAGE4O60829 102 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 PFDN1O60925 122 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 TSPOP30536 169 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 SULT1A2P50226 295 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 CRIP1P50238 77 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 TMEM78Q5T7P6 136 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 Q6AWC8 147 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 IQCF2Q8IXL9 164 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 LINC00612Q8N6U2 182 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 TMEM75Q8N9X5 138 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 RXFP4Q8TDU9 374 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 SFT2D1Q8WV19 159 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 TMEM208Q9BTX3 173 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 GSN-AS1Q9NRJ2 163 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 PSG8Q9UQ74 426 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 KLF12Q9Y4X4 402 aa6.51□□□□□ -1.37
VPS35-206ENST00000565228 GPX1P07203 203 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 NMBP08949 121 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 SPART-AS1P0CW21 52 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 CSN1S1P47710 185 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 ZFP69Q49AA0 526 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 MUC21Q5SSG8 566 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 SLC51BQ86UW2 128 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 TMEM256Q8N2U0 113 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 ARL6IP6Q8N6S5 226 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 C5orf17Q8NAS9 161 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 C20orf144Q9BQM9 153 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 LINC00467Q9BRT7 94 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 NOP10Q9NPE3 64 aaKnown RBP6.5□□□□□ -1.37
VPS35-206ENST00000565228 MDFICQ9P1T7 246 aa6.5□□□□□ -1.37
VPS35-206ENST00000565228 DNAH2Q9P225 4427 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 IGHV1OR15-1A0A075B7D0 117 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 TRBV7-9A0A0J9YWB2 115 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 UMAD1C9J7I0 102 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 PEX7O00628 323 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 GNRH2O43555 120 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 Q6ZTI0 123 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 PRNTQ86SH4 94 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 CMTM2Q8TAZ6 248 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 TMEM263Q8WUH6 116 aaKnown RBP6.49□□□□□ -1.37
VPS35-206ENST00000565228 C16orf74Q96GX8 76 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 PYGO2Q9BRQ0 406 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 NIPSNAP3BQ9BS92 247 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 ATG101Q9BSB4 218 aa6.49□□□□□ -1.37
VPS35-206ENST00000565228 DEFB131BA0A096LNP1 70 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 TRAV1-1A0A0B4J248 108 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 SCO2A0A1W2PP80 73 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 TMEM189A5PLL7 270 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 NUPR2A6NF83 97 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 H2AFB1P0C5Y9 115 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 DEFB130BP0DP73 79 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 DEFB130AP0DP74 79 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 HOXA5P20719 270 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 FLI1Q01543 452 aaPredicted RBP6.48□□□□□ -1.37
VPS35-206ENST00000565228 ANXA2RQ3ZCQ2 193 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 ALKAL2Q6UX46 152 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 DPPA3Q6W0C5 159 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 Q86TA4 180 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 CYB561D1Q8N8Q1 229 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 C2CD4CQ8TF44 421 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 TREM1Q9NP99 234 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 ARL2-SNX15V9GYD0 113 aa6.48□□□□□ -1.37
VPS35-206ENST00000565228 IGHV4-4A0A075B6R2 117 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 TRAV10A0A0B4J240 114 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 IGKV3D-20A0A0C4DH25 116 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 IGLL5B9A064 214 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 TYMSP04818 313 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 EIF4E3Q8N5X7 224 aaKnown RBP6.47□□□□□ -1.37
VPS35-206ENST00000565228 POM121L12Q8N7R1 296 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 PCNPQ8WW12 178 aaKnown RBP6.47□□□□□ -1.37
VPS35-206ENST00000565228 LINC00476Q8WZB0 136 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 ZC2HC1AQ96GY0 325 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 DERL1Q9BUN8 251 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 LENEPQ9Y5L5 61 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 DNAH17Q9UFH2 4485 aa6.47□□□□□ -1.37
VPS35-206ENST00000565228 IGHV3-16A0A0C4DH30 117 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 GAGE12BA1L429 117 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 CBY3A6NI87 242 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 LYRM9A8MSI8 78 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 SPINK4O60575 86 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 GAGE7O76087 117 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 GCGP01275 180 aa6.46□□□□□ -1.38
VPS35-206ENST00000565228 IGLV2-8P01709 118 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms