RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GPR61Q9BZJ8 451 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 AGPAT4-IT1Q9H0P7 198 aa6.74□□□□□ -1.33
VPS39-207ENST00000563692 TMEM189A5PLL7 270 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 CA1P00915 261 aaPredicted RBP6.73□□□□□ -1.33
VPS39-207ENST00000563692 MT-ND6P03923 174 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 TRGC1P0CF51 173 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 SLURP1P55000 103 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 FOXA3P55318 350 aaPredicted RBP6.73□□□□□ -1.33
VPS39-207ENST00000563692 FABP9Q0Z7S8 132 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 ACTL10Q5JWF8 245 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 KPRPQ5T749 579 aaPredicted RBP6.73□□□□□ -1.33
VPS39-207ENST00000563692 Q6AWC8 147 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 RBPMS2Q6ZRY4 209 aaKnown RBP6.73□□□□□ -1.33
VPS39-207ENST00000563692 ATP5L2Q7Z4Y8 100 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 WFDC3Q8IUB2 231 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 NUP35Q8NFH5 326 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 FRZBQ92765 325 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 BORCS7Q96B45 105 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 C8orf49Q96NF6 230 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 NEU1Q99519 415 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 MS4A6AQ9H2W1 248 aa6.73□□□□□ -1.33
VPS39-207ENST00000563692 VWFP04275 2813 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 TRAV2A0A0B4J234 112 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 TRBV7-9A0A0J9YWB2 115 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 HIGD1CA8MV81 97 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 CCL24O00175 119 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 SPINK4O60575 86 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 SH2D1AO60880 128 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 S100A8P05109 93 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 CRIP1P50238 77 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 NDUFA6P56556 154 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 RAB4BP61018 213 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 HIST1H1AQ02539 215 aaPredicted RBP6.72□□□□□ -1.33
VPS39-207ENST00000563692 RIGQ13278 110 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 DEFB136Q30KP8 78 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 C18orf65Q6ZTR6 163 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 WFDC9Q8NEX5 89 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 OR8A1Q8NGG7 326 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 MRAPQ8TCY5 172 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 DYNLRB2Q8TF09 96 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 C20orf173Q96LM9 149 aa6.72□□□□□ -1.33
VPS39-207ENST00000563692 A0A1B0GW15 77 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 C5orf52A6NGY3 159 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 SNURFLB1AK76 121 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 K7EQG2 157 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BKO60814 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HLA-DQA1P01909 254 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 ORM1P02763 201 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 PRB2P02812 416 aaPredicted RBP6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BJP06899 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 IGLL1P15814 213 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BOP23527 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BBP33778 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 TFPI2P48307 235 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BDP58876 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 SNRPEP62304 92 aaKnown RBP6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BCP62807 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST2H2BEQ16778 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.71□□□□□ -1.34
VPS39-207ENST00000563692 MRPL54Q6P161 138 aaKnown RBP6.71□□□□□ -1.34
VPS39-207ENST00000563692 EBLN2Q6P2I7 272 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 Q8TAT8 98 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 DCANP1Q8TF63 244 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 DLX4Q92988 240 aaPredicted RBP6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BHQ93079 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 PGLYRP4Q96LB8 373 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BNQ99877 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 HIST1H2BMQ99879 126 aa6.71□□□□□ -1.34
VPS39-207ENST00000563692 MCRIP2Q9BUT9 160 aaKnown RBP6.71□□□□□ -1.34
VPS39-207ENST00000563692 MRPL18Q9H0U6 180 aaKnown RBP6.71□□□□□ -1.34
VPS39-207ENST00000563692 TRAV25A0A0B4J276 109 aa6.7□□□□□ -1.34
VPS39-207ENST00000563692 DUSP14O95147 198 aaKnown RBP6.7□□□□□ -1.34
VPS39-207ENST00000563692 APCSP02743 223 aa6.7□□□□□ -1.34
VPS39-207ENST00000563692 CSN3P07498 182 aa6.7□□□□□ -1.34
VPS39-207ENST00000563692 PRB4P10163 310 aaPredicted RBP6.7□□□□□ -1.34
VPS39-207ENST00000563692 EDN2P20800 178 aa6.7□□□□□ -1.34
VPS39-207ENST00000563692 RAX2Q96IS3 184 aa6.7□□□□□ -1.34
VPS39-207ENST00000563692 DUX3Q96PT4 197 aa6.7□□□□□ -1.34
VPS39-207ENST00000563692 ZMAT5Q9UDW3 170 aaKnown RBP6.7□□□□□ -1.34
VPS39-207ENST00000563692 TRAV21A0A0B4J279 112 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 A0A1B0GUT8 65 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 F2Z2F3 143 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 PHOX2AO14813 284 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 GPX1P07203 203 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 CAMPP49913 170 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 ZNF80P51504 273 aaPredicted RBP6.69□□□□□ -1.34
VPS39-207ENST00000563692 CMC4P56277 68 aaPredicted RBP6.69□□□□□ -1.34
VPS39-207ENST00000563692 HBBP68871 147 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 FHL3Q13643 280 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 PSMG4Q5JS54 123 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 TMEM136Q6ZRR5 245 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 LINC00482Q8N8I6 264 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 GTSF1Q8WW33 167 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 SIGLEC8Q9NYZ4 499 aa6.69□□□□□ -1.34
VPS39-207ENST00000563692 TMSB15BA0A087X1C1 80 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 OR4C46A6NHA9 309 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 UBE2CO00762 179 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 ZNF688P0C7X2 276 aa6.68□□□□□ -1.34
VPS39-207ENST00000563692 ZNF705DP0CH99 300 aaPredicted RBP6.68□□□□□ -1.34
VPS39-207ENST00000563692 ZNF705BP0CI00 300 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms