RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 OR11H12B2RN74 326 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 LYNX1G3V0Z9 82 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 LYNX1P0DP58 116 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 HLA-DRB4P13762 266 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 RPL7P18124 248 aaKnown RBP12.78□□□□□ -0.36
TPM1-228ENST00000560975 PSMB2P49721 201 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 SMCPP49901 116 aaPredicted RBP12.78□□□□□ -0.36
TPM1-228ENST00000560975 NFE4Q86UQ8 179 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 OR11H1Q8NG94 326 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 OR11H2Q8NH07 326 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 TMEM190Q8WZ59 177 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 SMAD5-AS1Q9Y6J3 95 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 HLA-DRB4X5D2U9 266 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 IGFL2Q6UWQ7 119 aa12.77□□□□□ -0.36
TPM1-228ENST00000560975 IL17RELQ6ZVW7 336 aa12.77□□□□□ -0.36
TPM1-228ENST00000560975 RNF182Q8N6D2 247 aa12.77□□□□□ -0.36
TPM1-228ENST00000560975 C1QTNF4Q9BXJ3 329 aa12.77□□□□□ -0.36
TPM1-228ENST00000560975 MFAP4P55083 255 aa12.77□□□□□ -0.37
TPM1-228ENST00000560975 COX8CQ7Z4L0 72 aa12.77□□□□□ -0.37
TPM1-228ENST00000560975 RAB1BQ9H0U4 201 aa12.77□□□□□ -0.37
TPM1-228ENST00000560975 DYNLRB1Q9NP97 96 aa12.77□□□□□ -0.37
TPM1-228ENST00000560975 MYMXA0A1B0GTQ4 84 aa12.76□□□□□ -0.37
TPM1-228ENST00000560975 FHL3Q13643 280 aa12.76□□□□□ -0.37
TPM1-228ENST00000560975 CNFNQ9BYD5 112 aa12.76□□□□□ -0.37
TPM1-228ENST00000560975 LINC01549A6NIU2 74 aa12.76□□□□□ -0.37
TPM1-228ENST00000560975 ARHGAP32A7KAX9 2087 aa12.76□□□□□ -0.37
TPM1-228ENST00000560975 LINC01548A6NM66 108 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 C11orf21Q9P2W6 132 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 PLNP26678 52 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 HES1Q14469 280 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 LINC01559Q495D7 138 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 CFAP126Q5VTH2 177 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 ZFP2Q6ZN57 461 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 CACNA1BQ00975 2339 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 IGKV3D-20A0A0C4DH25 116 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 NRACQ8N912 160 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 FANCD2OSQ96PS1 177 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 PSMG3-AS1Q96PY0 264 aa12.75□□□□□ -0.37
TPM1-228ENST00000560975 RALYQ9UKM9 306 aaKnown RBP12.75□□□□□ -0.37
TPM1-228ENST00000560975 IGHV3-66A0A0C4DH42 116 aa12.74□□□□□ -0.37
TPM1-228ENST00000560975 TMEM238LA0A1B0GVL6 79 aa12.74□□□□□ -0.37
TPM1-228ENST00000560975 F8W735 103 aaPredicted RBP12.74□□□□□ -0.37
TPM1-228ENST00000560975 XGP55808 180 aa12.74□□□□□ -0.37
TPM1-228ENST00000560975 Q6ZQT7 251 aa12.74□□□□□ -0.37
TPM1-228ENST00000560975 TGFAP01135 160 aa12.74□□□□□ -0.37
TPM1-228ENST00000560975 LGALS1P09382 135 aaKnown RBP12.74□□□□□ -0.37
TPM1-228ENST00000560975 GATA3P23771 443 aa12.74□□□□□ -0.37
TPM1-228ENST00000560975 DLX4Q92988 240 aaPredicted RBP12.74□□□□□ -0.37
TPM1-228ENST00000560975 RNASE6Q93091 150 aaKnown RBP12.74□□□□□ -0.37
TPM1-228ENST00000560975 C21orf62Q9NYP8 219 aa12.74□□□□□ -0.37
TPM1-228ENST00000560975 IGHV3OR16-13A0A075B7E8 117 aa12.73□□□□□ -0.37
TPM1-228ENST00000560975 IGHV3-74A0A0B4J1X5 117 aa12.73□□□□□ -0.37
TPM1-228ENST00000560975 H7C1H1 209 aa12.73□□□□□ -0.37
TPM1-228ENST00000560975 F8VRH5 84 aa12.73□□□□□ -0.37
TPM1-228ENST00000560975 NBR2O15453 112 aa12.73□□□□□ -0.37
TPM1-228ENST00000560975 ONECUT1Q9UBC0 465 aa12.73□□□□□ -0.37
TPM1-228ENST00000560975 KAAG1Q9UBP8 84 aa12.73□□□□□ -0.37
TPM1-228ENST00000560975 SPRY2O43597 315 aa12.72□□□□□ -0.37
TPM1-228ENST00000560975 KLRD1Q13241 179 aa12.72□□□□□ -0.37
TPM1-228ENST00000560975 TMEM78Q5T7P6 136 aa12.72□□□□□ -0.37
TPM1-228ENST00000560975 SCGB1D4Q6XE38 83 aa12.72□□□□□ -0.37
TPM1-228ENST00000560975 VKORC1Q9BQB6 163 aa12.72□□□□□ -0.37
TPM1-228ENST00000560975 RAXQ9Y2V3 346 aa12.72□□□□□ -0.37
TPM1-228ENST00000560975 SRSF9Q13242 221 aaKnown RBP eCLIP12.72□□□□□ -0.37
TPM1-228ENST00000560975 Q6ZUT4 128 aa12.72□□□□□ -0.37
TPM1-228ENST00000560975 GVINP1Q7Z2Y8 2422 aa12.72□□□□□ -0.37
TPM1-228ENST00000560975 PLEKHB2Q96CS7 222 aa12.71□□□□□ -0.37
TPM1-228ENST00000560975 RNF183Q96D59 192 aa12.71□□□□□ -0.37
TPM1-228ENST00000560975 SCGB3A1Q96QR1 104 aa12.71□□□□□ -0.37
TPM1-228ENST00000560975 IGLV11-55A0A075B6I3 123 aa12.71□□□□□ -0.37
TPM1-228ENST00000560975 SPANXN1Q5VSR9 72 aa12.71□□□□□ -0.37
TPM1-228ENST00000560975 ZNF48Q96MX3 618 aaPredicted RBP12.71□□□□□ -0.37
TPM1-228ENST00000560975 SRSF8Q9BRL6 282 aaKnown RBP12.71□□□□□ -0.37
TPM1-228ENST00000560975 ZNF815PA8K554 130 aa12.71□□□□□ -0.38
TPM1-228ENST00000560975 PRADC1Q9BSG0 188 aa12.71□□□□□ -0.38
TPM1-228ENST00000560975 TSPAN13O95857 204 aa12.7□□□□□ -0.38
TPM1-228ENST00000560975 SRSF2Q01130 221 aaKnown RBP12.7□□□□□ -0.38
TPM1-228ENST00000560975 CARD19Q96LW7 228 aa12.7□□□□□ -0.38
TPM1-228ENST00000560975 ATMQ13315 3056 aa12.69□□□□□ -0.38
TPM1-228ENST00000560975 H3BVH4 76 aa12.69□□□□□ -0.38
TPM1-228ENST00000560975 NDPQ00604 133 aa12.69□□□□□ -0.38
TPM1-228ENST00000560975 KLHL30-AS1Q8NEE0 82 aa12.69□□□□□ -0.38
TPM1-228ENST00000560975 EP300Q09472 2414 aaPredicted RBP12.69□□□□□ -0.38
TPM1-228ENST00000560975 CACNA1HO95180 2353 aa12.69□□□□□ -0.38
TPM1-228ENST00000560975 IGHV3-49A0A0A0MS15 119 aa12.68□□□□□ -0.38
TPM1-228ENST00000560975 J3KRW8 73 aa12.68□□□□□ -0.38
TPM1-228ENST00000560975 CTSGP08311 255 aa12.68□□□□□ -0.38
TPM1-228ENST00000560975 SLC25A16P16260 332 aa12.68□□□□□ -0.38
TPM1-228ENST00000560975 APC2O95996 2303 aa12.68□□□□□ -0.38
TPM1-228ENST00000560975 ATP6V0E2Q8NHE4 81 aa12.68□□□□□ -0.38
TPM1-228ENST00000560975 DEFB104AQ8WTQ1 72 aa12.68□□□□□ -0.38
TPM1-228ENST00000560975 AGPAT4-IT1Q9H0P7 198 aa12.68□□□□□ -0.38
TPM1-228ENST00000560975 CUL9Q8IWT3 2517 aa12.67□□□□□ -0.38
TPM1-228ENST00000560975 IGHV7-4-1A0A0J9YVY3 117 aa12.67□□□□□ -0.38
TPM1-228ENST00000560975 LY6LH3BQJ8 138 aa12.67□□□□□ -0.38
TPM1-228ENST00000560975 RNF5Q99942 180 aa12.67□□□□□ -0.38
TPM1-228ENST00000560975 PRSS29PA6NIE9 313 aa12.67□□□□□ -0.38
TPM1-228ENST00000560975 KIR2DL4Q99706 377 aa12.67□□□□□ -0.38
TPM1-228ENST00000560975 SMIM2Q9BVW6 85 aa12.67□□□□□ -0.38
TPM1-228ENST00000560975 SS18L2Q9UHA2 77 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms