RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 G3V4G9 280 aa10.58□□□□□ -0.72
VPS33A-208ENST00000543633 TMEM158Q8WZ71 300 aa10.58□□□□□ -0.72
VPS33A-208ENST00000543633 C18orf15Q96N68 181 aa10.58□□□□□ -0.72
VPS33A-208ENST00000543633 TPRP12270 2363 aaKnown RBP10.58□□□□□ -0.72
VPS33A-208ENST00000543633 PRSS1P07477 247 aa10.58□□□□□ -0.72
VPS33A-208ENST00000543633 SPOCK3Q9BQ16 436 aa10.58□□□□□ -0.72
VPS33A-208ENST00000543633 TM2D2Q9BX73 214 aa10.58□□□□□ -0.72
VPS33A-208ENST00000543633 PCNX1Q96RV3 2341 aa10.58□□□□□ -0.72
VPS33A-208ENST00000543633 IGKV3D-20A0A0C4DH25 116 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 PRAC2D3DTV9 90 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 ERCC8Q13216 396 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 C15orf32Q32M92 178 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 TMEM78Q5T7P6 136 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 IGFL4Q6B9Z1 124 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 C9orf47Q6ZRZ4 202 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 FOXC2Q99958 501 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 SIRPDQ9H106 197 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 LENEPQ9Y5L5 61 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 ACACBO00763 2458 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 IGKV2D-26A0A0A0MRZ7 120 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 SAMD5Q5TGI4 173 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 NRACQ8N912 160 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 MRAP2Q96G30 205 aa10.57□□□□□ -0.72
VPS33A-208ENST00000543633 TRBV7-1A0A0A6YYK4 115 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 IGHV7-4-1A0A0J9YVY3 117 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 A0A1W2PRD5 423 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 A0A1W2PRF3 423 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 A0A1W2PRM7 423 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 CLPSL1A2RUU4 121 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 LINC01619G3V211 115 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 LAGE3Q14657 143 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 MYOZ3Q8TDC0 251 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 AGPAT4-IT1Q9H0P7 198 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 U3KQE9 123 aa10.56□□□□□ -0.72
VPS33A-208ENST00000543633 SMG1Q96Q15 3661 aaKnown RBP10.56□□□□□ -0.72
VPS33A-208ENST00000543633 TRBV25-1A0A075B6N4 114 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 SAP30O75446 220 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 GCSHP23434 173 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 PLNP26678 52 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 WFDC3Q8IUB2 231 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 CEND1Q8N111 149 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 EEF1AKMT3Q96AZ1 226 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 A0A087WX48 190 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 TRAV12-1A0A0B4J245 112 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 K7EMI3 77 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 GAS8-AS1O95177 125 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 GRNP28799 593 aaKnown RBP10.55□□□□□ -0.72
VPS33A-208ENST00000543633 FXYD2P54710 66 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 ZC2HC1BQ5TFG8 222 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 PHLDA1Q8WV24 401 aaPredicted RBP10.55□□□□□ -0.72
VPS33A-208ENST00000543633 RAB37Q96AX2 223 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 METTL26Q96S19 204 aa10.55□□□□□ -0.72
VPS33A-208ENST00000543633 LY6HO94772 140 aa10.54□□□□□ -0.72
VPS33A-208ENST00000543633 SLC25A16P16260 332 aa10.54□□□□□ -0.72
VPS33A-208ENST00000543633 UBE2E1P51965 193 aa10.54□□□□□ -0.72
VPS33A-208ENST00000543633 CCDC140Q96MF4 163 aa10.54□□□□□ -0.72
VPS33A-208ENST00000543633 C11orf21Q9P2W6 132 aa10.54□□□□□ -0.72
VPS33A-208ENST00000543633 TRAV8-2A0A0B4J237 113 aa10.53□□□□□ -0.72
VPS33A-208ENST00000543633 CLEC3BP05452 202 aa10.53□□□□□ -0.72
VPS33A-208ENST00000543633 RNF182Q8N6D2 247 aa10.53□□□□□ -0.72
VPS33A-208ENST00000543633 ATP6V0E1O15342 81 aa10.53□□□□□ -0.72
VPS33A-208ENST00000543633 TRGV3P03979 118 aa10.53□□□□□ -0.72
VPS33A-208ENST00000543633 GATA1P15976 413 aaPredicted RBP10.53□□□□□ -0.72
VPS33A-208ENST00000543633 TCTAP57738 103 aa10.53□□□□□ -0.72
VPS33A-208ENST00000543633 C8orf86Q6ZUL3 223 aa10.53□□□□□ -0.72
VPS33A-208ENST00000543633 C9orf139Q6ZV77 190 aa10.53□□□□□ -0.72
VPS33A-208ENST00000543633 NBASA2RRP1 2371 aa10.52□□□□□ -0.72
VPS33A-208ENST00000543633 CCL21O00585 134 aa10.52□□□□□ -0.73
VPS33A-208ENST00000543633 ECSCRQ19T08 205 aa10.52□□□□□ -0.73
VPS33A-208ENST00000543633 NAA38Q9BRA0 125 aaKnown RBP10.52□□□□□ -0.73
VPS33A-208ENST00000543633 USP24Q9UPU5 2620 aa10.52□□□□□ -0.73
VPS33A-208ENST00000543633 COL6A6A6NMZ7 2263 aa10.52□□□□□ -0.73
VPS33A-208ENST00000543633 MED14OSP0DP75 135 aa10.51□□□□□ -0.73
VPS33A-208ENST00000543633 ADORA2A-AS1P86434 159 aa10.51□□□□□ -0.73
VPS33A-208ENST00000543633 ORMDL2Q53FV1 153 aa10.51□□□□□ -0.73
VPS33A-208ENST00000543633 GTSCR1Q86UQ5 136 aa10.51□□□□□ -0.73
VPS33A-208ENST00000543633 SMIM2Q9BVW6 85 aa10.51□□□□□ -0.73
VPS33A-208ENST00000543633 MRPL35Q9NZE8 188 aaKnown RBP10.51□□□□□ -0.73
VPS33A-208ENST00000543633 E9PLD3 99 aa10.51□□□□□ -0.73
VPS33A-208ENST00000543633 PPIFP30405 207 aaKnown RBP10.51□□□□□ -0.73
VPS33A-208ENST00000543633 SPANXN1Q5VSR9 72 aa10.51□□□□□ -0.73
VPS33A-208ENST00000543633 AJUBAQ96IF1 538 aa10.51□□□□□ -0.73
VPS33A-208ENST00000543633 IGHV3OR16-8A0A075B7F1 116 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 IGHV3-35A0A0C4DH35 117 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 CENPVL3A0A0U1RRI6 287 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.5□□□□□ -0.73
VPS33A-208ENST00000543633 ZFP36P26651 326 aaKnown RBP10.5□□□□□ -0.73
VPS33A-208ENST00000543633 CRIP2P52943 208 aaPredicted RBP10.5□□□□□ -0.73
VPS33A-208ENST00000543633 CLEC19AQ6UXS0 136 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 C20orf78Q9BR46 151 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 IGSF10Q6WRI0 2623 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 TRAV40A0A0B4J280 105 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 FAM223BA6NKX1 122 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 F8VRH5 84 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 H7C1H1 209 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 M0R381 172 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 ZNF207O43670 478 aaKnown RBP10.5□□□□□ -0.73
VPS33A-208ENST00000543633 CDSNQ15517 529 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 TM4SF20Q53R12 229 aa10.5□□□□□ -0.73
VPS33A-208ENST00000543633 FAM223AQ8IWN6 122 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms