RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	OR5A1	Q8NGJ0	315 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	CCDC140	Q96MF4	163 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	GFRA4	Q9GZZ7	299 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	THYN1	Q9P016	225 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	MINOS1-NBL1	R4GNA1	71 aa		11.43	□□□□□ -0.58
DDX55-209	ENST00000542286	IGHV4-61	A0A0C4DH41	118 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	LOC389332	A0A1B0GUA5	103 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	SH2D1A	O60880	128 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	CSN1S1	P47710	185 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	C1orf122	Q6ZSJ8	110 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	BOD1L2	Q8IYS8	172 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	TRAV40	A0A0B4J280	105 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286		A0A1B0GUT8	65 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286		A1L4Q6	167 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	SMKR1	H3BMG3	65 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	NPFF	O15130	113 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	SMIM17	P0DL12	118 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	HSD52	Q0P140	79 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	LYZL1	Q6UWQ5	148 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	S100A7A	Q86SG5	101 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	OR8A1	Q8NGG7	326 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	PRSS3P2	Q8NHM4	247 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	GTSF1L	Q9H1H1	148 aa		11.42	□□□□□ -0.58
DDX55-209	ENST00000542286	EPG5	Q9HCE0	2579 aa		11.41	□□□□□ -0.58
DDX55-209	ENST00000542286	HAX1	O00165	279 aa		11.41	□□□□□ -0.58
DDX55-209	ENST00000542286	AZU1	P20160	251 aa		11.41	□□□□□ -0.58
DDX55-209	ENST00000542286	FA2H	Q7L5A8	372 aa		11.41	□□□□□ -0.58
DDX55-209	ENST00000542286		K7EQM0	130 aa		11.41	□□□□□ -0.58
DDX55-209	ENST00000542286	DEFB1	P60022	68 aa		11.41	□□□□□ -0.58
DDX55-209	ENST00000542286	LOXL1	Q08397	574 aa	Predicted RBP	11.41	□□□□□ -0.58
DDX55-209	ENST00000542286	IGHV4-38-2	P0DP08	117 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	C16orf54	Q6UWD8	224 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	ADAMTSL5	Q6ZMM2	481 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	AMN1	Q8IY45	258 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	ZNF502	Q8TBZ5	544 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	DPF1	Q92782	380 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	CLUHP3	Q96NS8	147 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	MSRB1	Q9NZV6	116 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	TEX48	A0A1B0GUV7	120 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	NDUFS8	O00217	210 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	SMAD7	O15105	426 aa	Known RBP	11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	CT45A10	P0DMU9	189 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	SMAGP	Q0VAQ4	97 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	CREBBP	Q92793	2442 aa		11.4	□□□□□ -0.58
DDX55-209	ENST00000542286	TRBV12-3	P01733	135 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	FABP2	P12104	132 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	PRSS57	Q6UWY2	283 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	GAS8-AS1	O95177	125 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	BMI1	P35226	326 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286		Q6ZS46	218 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	OR9G4	Q8NGQ1	327 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	PRR25	Q96S07	402 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	ZFAND3	Q9H8U3	227 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	CLPSL1	A2RUU4	121 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	TMEM189	A5PLL7	270 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	RPL7	P18124	248 aa	Known RBP	11.39	□□□□□ -0.59
DDX55-209	ENST00000542286	SIGMAR1	Q99720	223 aa		11.39	□□□□□ -0.59
DDX55-209	ENST00000542286		J3KRW8	73 aa		11.38	□□□□□ -0.59
DDX55-209	ENST00000542286	FAM110D	Q8TAY7	271 aa	Predicted RBP	11.38	□□□□□ -0.59
DDX55-209	ENST00000542286	OOSP1	A8MZH6	123 aa		11.38	□□□□□ -0.59
DDX55-209	ENST00000542286	IFI27	P40305	119 aa	Predicted RBP	11.38	□□□□□ -0.59
DDX55-209	ENST00000542286	SAMD5	Q5TGI4	173 aa		11.38	□□□□□ -0.59
DDX55-209	ENST00000542286	ZNF575	Q86XF7	245 aa		11.38	□□□□□ -0.59
DDX55-209	ENST00000542286	LYPD1	Q8N2G4	141 aa		11.38	□□□□□ -0.59
DDX55-209	ENST00000542286	OR4X2	Q8NGF9	303 aa		11.38	□□□□□ -0.59
DDX55-209	ENST00000542286	IGKV3-7	A0A075B6H7	116 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286		D6R8Y8	96 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	SPRY2	O43597	315 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	IGHV3-11	P01762	117 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	TM4SF20	Q53R12	229 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	IL17REL	Q6ZVW7	336 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	PCP2	Q8IVA1	136 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	C5orf56	Q8N8D9	126 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	SORL1	Q92673	2214 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286		A0A096LNJ9	63 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	SIVA1	O15304	175 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	BUB3	O43684	328 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	ORM1	P02763	201 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	CACNG7	P62955	275 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	PIFO	Q8TCI5	191 aa		11.37	□□□□□ -0.59
DDX55-209	ENST00000542286	ZNF469	Q96JG9	3925 aa	Predicted RBP	11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	IGHV4-30-2	A0A087WSY4	118 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	NBPF19	A0A087WUL8	3843 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	SCGB1A1	P11684	91 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	NMU	P48645	174 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286		Q5PR19	223 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	ZNF48	Q96MX3	618 aa	Predicted RBP	11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	TEX15	Q9BXT5	2789 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	PDE6H	Q13956	83 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	LGALS9B	Q3B8N2	356 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	LGALS9C	Q6DKI2	356 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	WFDC3	Q8IUB2	231 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	MAPK1IP1L	Q8NDC0	245 aa		11.36	□□□□□ -0.59
DDX55-209	ENST00000542286	FBLL1	A6NHQ2	334 aa	Known RBP	11.35	□□□□□ -0.59
DDX55-209	ENST00000542286	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		11.35	□□□□□ -0.59
DDX55-209	ENST00000542286	MYO9A	B2RTY4	2548 aa		11.35	□□□□□ -0.59
DDX55-209	ENST00000542286	PRB1	P04280	392 aa		11.35	□□□□□ -0.59
DDX55-209	ENST00000542286	SMIM13	P0DJ93	91 aa		11.35	□□□□□ -0.59
DDX55-209	ENST00000542286	RIG	Q13278	110 aa		11.35	□□□□□ -0.59
DDX55-209	ENST00000542286	SMPX	Q9UHP9	88 aa		11.35	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms