RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TMEM256Q8N2U0 113 aa10.87□□□□□ -0.67
NUP54-213ENST00000513352 C2CD4CQ8TF44 421 aa10.87□□□□□ -0.67
NUP54-213ENST00000513352 C11orf52Q96A22 123 aa10.87□□□□□ -0.67
NUP54-213ENST00000513352 TVP23CQ96ET8 276 aa10.87□□□□□ -0.67
NUP54-213ENST00000513352 U3KQK5 164 aa10.87□□□□□ -0.67
NUP54-213ENST00000513352 PRKDCP78527 4128 aaKnown RBP10.86□□□□□ -0.67
NUP54-213ENST00000513352 S100A9P06702 114 aaKnown RBP10.86□□□□□ -0.67
NUP54-213ENST00000513352 RBMY1A1P0DJD3 496 aaKnown RBP10.86□□□□□ -0.67
NUP54-213ENST00000513352 RBMY1CP0DJD4 496 aa10.86□□□□□ -0.67
NUP54-213ENST00000513352 RBMY1FQ15415 496 aaKnown RBP10.86□□□□□ -0.67
NUP54-213ENST00000513352 TMEM183BQ1AE95 376 aa10.86□□□□□ -0.67
NUP54-213ENST00000513352 SAPCD1Q5SSQ6 148 aa10.86□□□□□ -0.67
NUP54-213ENST00000513352 C20orf144Q9BQM9 153 aa10.86□□□□□ -0.67
NUP54-213ENST00000513352 DERL1Q9BUN8 251 aa10.86□□□□□ -0.67
NUP54-213ENST00000513352 ZNF705GA8MUZ8 300 aaPredicted RBP10.85□□□□□ -0.67
NUP54-213ENST00000513352 RPL35P42766 123 aaKnown RBP10.85□□□□□ -0.67
NUP54-213ENST00000513352 ZNF674Q2M3X9 581 aa10.85□□□□□ -0.67
NUP54-213ENST00000513352 SMUG1Q53HV7 270 aa10.85□□□□□ -0.67
NUP54-213ENST00000513352 ZNF705AQ6ZN79 300 aaPredicted RBP10.85□□□□□ -0.67
NUP54-213ENST00000513352 NAGKQ9UJ70 344 aa10.85□□□□□ -0.67
NUP54-213ENST00000513352 KLF12Q9Y4X4 402 aa10.85□□□□□ -0.67
NUP54-213ENST00000513352 H7BYZ3 331 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 RGS13O14921 159 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 DEFB4AO15263 64 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 GCGP01275 180 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 RRN3P1Q2M238 152 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 CLLU1Q5K131 121 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 BAGE2Q86Y30 109 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 NHLRC2Q8NBF2 726 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 ZFP30Q9Y2G7 519 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 X6R8D5 127 aa10.84□□□□□ -0.67
NUP54-213ENST00000513352 IGHV4-28A0A0C4DH34 117 aa10.83□□□□□ -0.68
NUP54-213ENST00000513352 TRBV6-1A0A0K0K1D8 114 aa10.83□□□□□ -0.68
NUP54-213ENST00000513352 LTAP01374 205 aa10.83□□□□□ -0.68
NUP54-213ENST00000513352 MIFP14174 115 aa10.83□□□□□ -0.68
NUP54-213ENST00000513352 PEA15Q15121 130 aa10.83□□□□□ -0.68
NUP54-213ENST00000513352 CENPWQ5EE01 88 aa10.83□□□□□ -0.68
NUP54-213ENST00000513352 MUC21Q5SSG8 566 aa10.83□□□□□ -0.68
NUP54-213ENST00000513352 Q6ZQT7 251 aa10.83□□□□□ -0.68
NUP54-213ENST00000513352 TRAV21A0A0B4J279 112 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 A0A0J9YWU9 116 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 RAB19A4D1S5 217 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 SMIM9A6NGZ8 99 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 TMEM250H0YL14 139 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 ZNF324O75467 553 aaPredicted RBP10.82□□□□□ -0.68
NUP54-213ENST00000513352 PRM2P04554 102 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 GNG4P50150 75 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 EMP1P54849 157 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 TAS2R60P59551 318 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 Q6AWC8 147 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 NEU1Q99519 415 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 PYGO2Q9BRQ0 406 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 TENM3Q9P273 2699 aa10.82□□□□□ -0.68
NUP54-213ENST00000513352 COL7A1Q02388 2944 aa10.81□□□□□ -0.68
NUP54-213ENST00000513352 CBY3A6NI87 242 aa10.81□□□□□ -0.68
NUP54-213ENST00000513352 MGST1P10620 155 aaKnown RBP10.81□□□□□ -0.68
NUP54-213ENST00000513352 ZNF80P51504 273 aaPredicted RBP10.81□□□□□ -0.68
NUP54-213ENST00000513352 TMEM183AQ8IXX5 376 aa10.81□□□□□ -0.68
NUP54-213ENST00000513352 Q8NAQ8 132 aa10.81□□□□□ -0.68
NUP54-213ENST00000513352 ZC2HC1AQ96GY0 325 aa10.81□□□□□ -0.68
NUP54-213ENST00000513352 PARLQ9H300 379 aa10.81□□□□□ -0.68
NUP54-213ENST00000513352 IGHV1OR15-1A0A075B7D0 117 aa10.8□□□□□ -0.68
NUP54-213ENST00000513352 PFN1P07737 140 aaKnown RBP10.8□□□□□ -0.68
NUP54-213ENST00000513352 SRP19P09132 144 aaKnown RBP10.8□□□□□ -0.68
NUP54-213ENST00000513352 AZU1P20160 251 aa10.8□□□□□ -0.68
NUP54-213ENST00000513352 SRSF3P84103 164 aaKnown RBP10.8□□□□□ -0.68
NUP54-213ENST00000513352 PRR27Q6MZM9 219 aa10.8□□□□□ -0.68
NUP54-213ENST00000513352 FAM159AQ6UWV7 190 aa10.8□□□□□ -0.68
NUP54-213ENST00000513352 FAM162BQ5T6X4 162 aa10.79□□□□□ -0.68
NUP54-213ENST00000513352 EIF4E3Q8N5X7 224 aaKnown RBP10.79□□□□□ -0.68
NUP54-213ENST00000513352 C16orf74Q96GX8 76 aa10.79□□□□□ -0.68
NUP54-213ENST00000513352 SMIM7Q9BQ49 75 aa10.79□□□□□ -0.68
NUP54-213ENST00000513352 TGP01266 2768 aa10.78□□□□□ -0.68
NUP54-213ENST00000513352 TMEM189A5PLL7 270 aa10.78□□□□□ -0.68
NUP54-213ENST00000513352 PGPEP1LA6NFU8 196 aa10.78□□□□□ -0.68
NUP54-213ENST00000513352 FABP5P3A8MUU1 101 aa10.78□□□□□ -0.68
NUP54-213ENST00000513352 SH2D1AO60880 128 aa10.78□□□□□ -0.68
NUP54-213ENST00000513352 ANXA2RQ3ZCQ2 193 aa10.78□□□□□ -0.68
NUP54-213ENST00000513352 DMRTA1Q5VZB9 504 aa10.78□□□□□ -0.68
NUP54-213ENST00000513352 TMEM263Q8WUH6 116 aaKnown RBP10.78□□□□□ -0.68
NUP54-213ENST00000513352 C11orf68Q9H3H3 251 aaKnown RBP10.78□□□□□ -0.68
NUP54-213ENST00000513352 TRBV20OR9-2A0A075B6H5 130 aa10.77□□□□□ -0.69
NUP54-213ENST00000513352 ZNF727A8MUV8 499 aa10.77□□□□□ -0.69
NUP54-213ENST00000513352 C9JQL5 133 aa10.77□□□□□ -0.69
NUP54-213ENST00000513352 NDUFS6O75380 124 aaKnown RBP10.77□□□□□ -0.69
NUP54-213ENST00000513352 ORM1P02763 201 aa10.77□□□□□ -0.69
NUP54-213ENST00000513352 SDF2L1Q9HCN8 221 aa10.77□□□□□ -0.69
NUP54-213ENST00000513352 TP53TG3Q9ULZ0 132 aa10.77□□□□□ -0.69
NUP54-213ENST00000513352 TRGV11A0A075B6L2 103 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 SNURFLB1AK76 121 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 M0R036 132 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 ZNF415Q09FC8 603 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 ZNF493Q6ZR52 646 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 COX8CQ7Z4L0 72 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 COMMD7Q86VX2 200 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 RNASE8Q8TDE3 154 aaKnown RBP10.76□□□□□ -0.69
NUP54-213ENST00000513352 KCNS1Q96KK3 526 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 LINC00467Q9BRT7 94 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 MLST8Q9BVC4 326 aa10.76□□□□□ -0.69
NUP54-213ENST00000513352 SMDT1Q9H4I9 107 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms