RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 KLLNB2CW77 178 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 PRM2P04554 102 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 HTN1P15515 57 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 CEBPGP53567 150 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 TMEM183BQ1AE95 376 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 ZNF506Q5JVG8 444 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 Q6ZQT7 251 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 C11orf52Q96A22 123 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 FAM210AQ96ND0 272 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 NIPSNAP3BQ9BS92 247 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 MED9Q9NWA0 146 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 LENEPQ9Y5L5 61 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 U3KQK5 164 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 X6R8D5 127 aa8.63□□□□□ -1.03
CUX1-210ENST00000497815 TRBV7-9A0A0J9YWB2 115 aa8.62□□□□□ -1.03
CUX1-210ENST00000497815 DEFB4AO15263 64 aa8.62□□□□□ -1.03
CUX1-210ENST00000497815 RPL35P42766 123 aaKnown RBP8.62□□□□□ -1.03
CUX1-210ENST00000497815 SAPCD1Q5SSQ6 148 aa8.62□□□□□ -1.03
CUX1-210ENST00000497815 ZNF705AQ6ZN79 300 aaPredicted RBP8.62□□□□□ -1.03
CUX1-210ENST00000497815 NHLRC2Q8NBF2 726 aa8.62□□□□□ -1.03
CUX1-210ENST00000497815 KLF12Q9Y4X4 402 aa8.62□□□□□ -1.03
CUX1-210ENST00000497815 ZNF705GA8MUZ8 300 aaPredicted RBP8.61□□□□□ -1.03
CUX1-210ENST00000497815 H7BYZ3 331 aa8.61□□□□□ -1.03
CUX1-210ENST00000497815 GCGP01275 180 aa8.61□□□□□ -1.03
CUX1-210ENST00000497815 S100A9P06702 114 aaKnown RBP8.61□□□□□ -1.03
CUX1-210ENST00000497815 SMUG1Q53HV7 270 aa8.61□□□□□ -1.03
CUX1-210ENST00000497815 CLLU1Q5K131 121 aa8.61□□□□□ -1.03
CUX1-210ENST00000497815 C20orf144Q9BQM9 153 aa8.61□□□□□ -1.03
CUX1-210ENST00000497815 NAGKQ9UJ70 344 aa8.61□□□□□ -1.03
CUX1-210ENST00000497815 IGHV4-28A0A0C4DH34 117 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 A0A0J9YWU9 116 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 TRBV6-1A0A0K0K1D8 114 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 RAB19A4D1S5 217 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 ZNF324O75467 553 aaPredicted RBP8.6□□□□□ -1.03
CUX1-210ENST00000497815 LTAP01374 205 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 ZNF80P51504 273 aaPredicted RBP8.6□□□□□ -1.03
CUX1-210ENST00000497815 EMP1P54849 157 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 SRSF3P84103 164 aaKnown RBP8.6□□□□□ -1.03
CUX1-210ENST00000497815 ZNF674Q2M3X9 581 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 MUC21Q5SSG8 566 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 BAGE2Q86Y30 109 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 TMEM256Q8N2U0 113 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 ZC2HC1AQ96GY0 325 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 ZFP30Q9Y2G7 519 aa8.6□□□□□ -1.03
CUX1-210ENST00000497815 PRKDCP78527 4128 aaKnown RBP8.6□□□□□ -1.03
CUX1-210ENST00000497815 RGS13O14921 159 aa8.59□□□□□ -1.03
CUX1-210ENST00000497815 MIFP14174 115 aa8.59□□□□□ -1.03
CUX1-210ENST00000497815 AZU1P20160 251 aa8.59□□□□□ -1.03
CUX1-210ENST00000497815 GNG4P50150 75 aa8.59□□□□□ -1.03
CUX1-210ENST00000497815 TAS2R60P59551 318 aa8.59□□□□□ -1.03
CUX1-210ENST00000497815 RRN3P1Q2M238 152 aa8.59□□□□□ -1.03
CUX1-210ENST00000497815 CENPWQ5EE01 88 aa8.59□□□□□ -1.03
CUX1-210ENST00000497815 Q8NAQ8 132 aa8.59□□□□□ -1.03
CUX1-210ENST00000497815 TRAV21A0A0B4J279 112 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 SMIM9A6NGZ8 99 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 CBY3A6NI87 242 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 TMEM250H0YL14 139 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 SRP19P09132 144 aaKnown RBP8.58□□□□□ -1.04
CUX1-210ENST00000497815 PEA15Q15121 130 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 Q6AWC8 147 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 TMEM183AQ8IXX5 376 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 NEU1Q99519 415 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 PYGO2Q9BRQ0 406 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 PARLQ9H300 379 aa8.58□□□□□ -1.04
CUX1-210ENST00000497815 TRBV20OR9-2A0A075B6H5 130 aa8.57□□□□□ -1.04
CUX1-210ENST00000497815 IGHV1OR15-1A0A075B7D0 117 aa8.57□□□□□ -1.04
CUX1-210ENST00000497815 PGPEP1LA6NFU8 196 aa8.57□□□□□ -1.04
CUX1-210ENST00000497815 C9JQL5 133 aa8.57□□□□□ -1.04
CUX1-210ENST00000497815 PFN1P07737 140 aaKnown RBP8.57□□□□□ -1.04
CUX1-210ENST00000497815 MGST1P10620 155 aaKnown RBP8.57□□□□□ -1.04
CUX1-210ENST00000497815 PRR27Q6MZM9 219 aa8.57□□□□□ -1.04
CUX1-210ENST00000497815 FAM159AQ6UWV7 190 aa8.57□□□□□ -1.04
CUX1-210ENST00000497815 EIF4E3Q8N5X7 224 aaKnown RBP8.57□□□□□ -1.04
CUX1-210ENST00000497815 TP53TG3Q9ULZ0 132 aa8.57□□□□□ -1.04
CUX1-210ENST00000497815 NBEAL2Q6ZNJ1 2754 aa8.56□□□□□ -1.04
CUX1-210ENST00000497815 SH2D1AO60880 128 aa8.56□□□□□ -1.04
CUX1-210ENST00000497815 CRIP1P50238 77 aa8.56□□□□□ -1.04
CUX1-210ENST00000497815 ANXA2RQ3ZCQ2 193 aa8.56□□□□□ -1.04
CUX1-210ENST00000497815 FAM162BQ5T6X4 162 aa8.56□□□□□ -1.04
CUX1-210ENST00000497815 C11orf21Q9P2W6 132 aa8.56□□□□□ -1.04
CUX1-210ENST00000497815 DNAH9Q9NYC9 4486 aa8.56□□□□□ -1.04
CUX1-210ENST00000497815 FABP5P3A8MUU1 101 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 M0R036 132 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 IGLV2-8P01709 118 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 ORM1P02763 201 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 COX8CQ7Z4L0 72 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 TMEM263Q8WUH6 116 aaKnown RBP8.55□□□□□ -1.04
CUX1-210ENST00000497815 C16orf74Q96GX8 76 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 SMIM7Q9BQ49 75 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 LINC00467Q9BRT7 94 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 MLST8Q9BVC4 326 aa8.55□□□□□ -1.04
CUX1-210ENST00000497815 C11orf68Q9H3H3 251 aaKnown RBP8.55□□□□□ -1.04
CUX1-210ENST00000497815 COL7A1Q02388 2944 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 TMSB15BA0A087X1C1 80 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 TMEM189A5PLL7 270 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 ZNF727A8MUV8 499 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 GNRH2O43555 120 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 ZNF493Q6ZR52 646 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 RNASE8Q8TDE3 154 aaKnown RBP8.54□□□□□ -1.04
CUX1-210ENST00000497815 EDA2RQ9HAV5 297 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms