RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 KCNRGQ8N5I3 272 aa4.53□□□□□ -1.68
USP54-202ENST00000413442 ZFAND2AQ8N6M9 145 aa4.53□□□□□ -1.68
USP54-202ENST00000413442 HIST1H2BAQ96A08 127 aa4.53□□□□□ -1.68
USP54-202ENST00000413442 PTH2Q96A98 100 aa4.53□□□□□ -1.68
USP54-202ENST00000413442 PHYHIPLQ96FC7 376 aa4.53□□□□□ -1.68
USP54-202ENST00000413442 ARPC5LQ9BPX5 153 aa4.53□□□□□ -1.68
USP54-202ENST00000413442 SH3BGRL3Q9H299 93 aa4.53□□□□□ -1.68
USP54-202ENST00000413442 TMPRSS5Q9H3S3 457 aa4.53□□□□□ -1.68
USP54-202ENST00000413442 KANTRA0A1W2PQU2 76 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 HMGB3O15347 200 aaKnown RBP4.52□□□□□ -1.69
USP54-202ENST00000413442 SPINK4O60575 86 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 SNRPCP09234 159 aaKnown RBP4.52□□□□□ -1.69
USP54-202ENST00000413442 ARL14EPLP0DKL9 152 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 DEFB130BP0DP73 79 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 DEFB130AP0DP74 79 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 HTN1P15515 57 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 RNASE4P34096 147 aaKnown RBP4.52□□□□□ -1.69
USP54-202ENST00000413442 RAB5CP51148 216 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 TCL1AP56279 114 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 RAB2AP61019 212 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 SUMO1P63165 101 aaKnown RBP4.52□□□□□ -1.69
USP54-202ENST00000413442 ZNF415Q09FC8 603 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 ERCC8Q13216 396 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 ZFP69Q49AA0 526 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 Q5BKY6 102 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 SOHLH1Q5JUK2 328 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 PIK3CD-AS1Q5SR53 167 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 RPL7L1Q6DKI1 246 aaKnown RBP4.52□□□□□ -1.69
USP54-202ENST00000413442 SH2D6Q7Z4S9 175 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 RASL10AQ92737 203 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 VGLL1Q99990 258 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 TXNDC17Q9BRA2 123 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 NOP10Q9NPE3 64 aaKnown RBP4.52□□□□□ -1.69
USP54-202ENST00000413442 EPDR1Q9UM22 224 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 ZFP30Q9Y2G7 519 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 KLF12Q9Y4X4 402 aa4.52□□□□□ -1.69
USP54-202ENST00000413442 KMT2CQ8NEZ4 4911 aaKnown RBP4.51□□□□□ -1.69
USP54-202ENST00000413442 TRGV2A0A075B6R0 118 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 TRBV6-1A0A0K0K1D8 114 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 FABP5P3A8MUU1 101 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 F5H768 121 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 ARPC5O15511 151 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 TCRAP04437 139 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 SMUG1Q53HV7 270 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 COX8CQ7Z4L0 72 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 CYB561D1Q8N8Q1 229 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 TMEM75Q8N9X5 138 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 C11orf72Q8NBR9 251 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 MBD3L1Q8WWY6 194 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 HYLS1Q96M11 299 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 ATG101Q9BSB4 218 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 TREM1Q9NP99 234 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 PRO0255Q9UI72 69 aa4.51□□□□□ -1.69
USP54-202ENST00000413442 IGKV2-40A0A087WW87 121 aaPredicted RBP4.5□□□□□ -1.69
USP54-202ENST00000413442 IGKV2D-40P01614 121 aaPredicted RBP4.5□□□□□ -1.69
USP54-202ENST00000413442 ORM1P02763 201 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 TPT1P13693 172 aaKnown RBP4.5□□□□□ -1.69
USP54-202ENST00000413442 TAGLN2P37802 199 aaKnown RBP4.5□□□□□ -1.69
USP54-202ENST00000413442 FLI1Q01543 452 aaPredicted RBP4.5□□□□□ -1.69
USP54-202ENST00000413442 CD300CQ08708 224 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 TMEM88Q6PEY1 159 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 GOLT1AQ6ZVE7 132 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 UBE2DNLQ8IWF7 75 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 LYSTQ99698 3801 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 SDF2L1Q9HCN8 221 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 CYTL1Q9NRR1 136 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 PSG8Q9UQ74 426 aa4.5□□□□□ -1.69
USP54-202ENST00000413442 TRAV1-1A0A0B4J248 108 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 A0A1W2PPQ1 181 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 GAGE12BA1L429 117 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 G3V3Q6 166 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 M0R2P5 195 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 BCL2L11O43521 198 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 PFDN1O60925 122 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 GAGE7O76087 117 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 IFNA7P01567 189 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 PFN1P07737 140 aaKnown RBP4.49□□□□□ -1.69
USP54-202ENST00000413442 GAGE12FP0CL80 117 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 GAGE12GP0CL81 117 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 GAGE12IP0CL82 117 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 HTN3P15516 51 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 BTN1A1Q13410 526 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 OR5I1Q13606 314 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 KIR3DS1Q14943 382 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 MRPL23Q16540 153 aaKnown RBP4.49□□□□□ -1.69
USP54-202ENST00000413442 DNLZQ5SXM8 178 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 LCE2AQ5TA79 106 aaPredicted RBP4.49□□□□□ -1.69
USP54-202ENST00000413442 ZNF767PQ75MW2 155 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 TCTE3Q8IZS6 198 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 FMC1Q96HJ9 113 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 UPK3BQ9BT76 320 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 GSN-AS1Q9NRJ2 163 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 HHLA3Q9XRX5 114 aa4.49□□□□□ -1.69
USP54-202ENST00000413442 STARD9Q9P2P6 4700 aa4.48□□□□□ -1.69
USP54-202ENST00000413442 TRGV1A0A0A0MS02 117 aa4.48□□□□□ -1.69
USP54-202ENST00000413442 MAP1LC3B2A6NCE7 125 aa4.48□□□□□ -1.69
USP54-202ENST00000413442 FAM74A7A6NL05 159 aa4.48□□□□□ -1.69
USP54-202ENST00000413442 J3KRW8 73 aa4.48□□□□□ -1.69
USP54-202ENST00000413442 C1QBP02746 253 aa4.48□□□□□ -1.69
USP54-202ENST00000413442 H2AFB1P0C5Y9 115 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 164.1 ms