RNA–Protein interactions for RNA: ENST00000413219.6

SDCBP-202, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SDCBP, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-202ENST00000413219 SMG1Q96Q15 3661 aaKnown RBP13.55□□□□□ -0.24
SDCBP-202ENST00000413219 ZZEF1O43149 2961 aa13.55□□□□□ -0.24
SDCBP-202ENST00000413219 CACNA1HO95180 2353 aa13.55□□□□□ -0.24
SDCBP-202ENST00000413219 IGHV3OR16-8A0A075B7F1 116 aa13.55□□□□□ -0.24
SDCBP-202ENST00000413219 C15orf32Q32M92 178 aa13.55□□□□□ -0.24
SDCBP-202ENST00000413219 FBXL19-AS1Q494R0 122 aa13.55□□□□□ -0.24
SDCBP-202ENST00000413219 ZNF479Q96JC4 524 aa13.55□□□□□ -0.24
SDCBP-202ENST00000413219 CEP250Q9BV73 2442 aa13.54□□□□□ -0.24
SDCBP-202ENST00000413219 ZNF207O43670 478 aaKnown RBP13.54□□□□□ -0.24
SDCBP-202ENST00000413219 C12orf74Q32Q52 190 aa13.54□□□□□ -0.24
SDCBP-202ENST00000413219 C9orf47Q6ZRZ4 202 aa13.54□□□□□ -0.24
SDCBP-202ENST00000413219 Q8N9W7 124 aa13.54□□□□□ -0.24
SDCBP-202ENST00000413219 IGHV3-35A0A0C4DH35 117 aa13.54□□□□□ -0.24
SDCBP-202ENST00000413219 CLPSL1A2RUU4 121 aa13.54□□□□□ -0.24
SDCBP-202ENST00000413219 J3QR89 54 aa13.54□□□□□ -0.24
SDCBP-202ENST00000413219 PRR30Q53SZ7 412 aaPredicted RBP13.54□□□□□ -0.24
SDCBP-202ENST00000413219 SAMD13Q5VXD3 122 aa13.54□□□□□ -0.24
SDCBP-202ENST00000413219 SPANXB1Q9NS25 103 aaPredicted RBP13.54□□□□□ -0.24
SDCBP-202ENST00000413219 TRAV8-2A0A0B4J237 113 aa13.53□□□□□ -0.24
SDCBP-202ENST00000413219 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.53□□□□□ -0.24
SDCBP-202ENST00000413219 H7C1H1 209 aa13.53□□□□□ -0.24
SDCBP-202ENST00000413219 MSRB2Q9Y3D2 182 aa13.53□□□□□ -0.24
SDCBP-202ENST00000413219 A0A1B0GWB2 263 aa13.52□□□□□ -0.24
SDCBP-202ENST00000413219 F8VRH5 84 aa13.52□□□□□ -0.24
SDCBP-202ENST00000413219 CLEC3BP05452 202 aa13.52□□□□□ -0.24
SDCBP-202ENST00000413219 UFC1Q9Y3C8 167 aa13.52□□□□□ -0.24
SDCBP-202ENST00000413219 SLC25A16P16260 332 aa13.52□□□□□ -0.25
SDCBP-202ENST00000413219 SPANXN1Q5VSR9 72 aa13.52□□□□□ -0.25
SDCBP-202ENST00000413219 HIST1H4GQ99525 98 aa13.52□□□□□ -0.25
SDCBP-202ENST00000413219 SMIM2Q9BVW6 85 aa13.52□□□□□ -0.25
SDCBP-202ENST00000413219 TRBV7-3A0A075B6L6 115 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 LY6HO94772 140 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 CHTOPQ9Y3Y2 248 aaKnown RBP13.51□□□□□ -0.25
SDCBP-202ENST00000413219 EP300Q09472 2414 aaPredicted RBP13.51□□□□□ -0.25
SDCBP-202ENST00000413219 TRAV26-2A0A0B4J265 109 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 K7EMI3 77 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 RRN3P1Q2M238 152 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 CD300EQ496F6 205 aaPredicted RBP13.51□□□□□ -0.25
SDCBP-202ENST00000413219 ORMDL2Q53FV1 153 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 SIGMAR1Q99720 223 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 LENEPQ9Y5L5 61 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 PCNX1Q96RV3 2341 aa13.51□□□□□ -0.25
SDCBP-202ENST00000413219 CNOT1A5YKK6 2376 aaKnown RBP13.5□□□□□ -0.25
SDCBP-202ENST00000413219 ASPMQ8IZT6 3477 aa13.5□□□□□ -0.25
SDCBP-202ENST00000413219 CIDEAO60543 219 aa13.5□□□□□ -0.25
SDCBP-202ENST00000413219 C8orf86Q6ZUL3 223 aa13.5□□□□□ -0.25
SDCBP-202ENST00000413219 METTL26Q96S19 204 aa13.5□□□□□ -0.25
SDCBP-202ENST00000413219 U3KQE9 123 aa13.5□□□□□ -0.25
SDCBP-202ENST00000413219 EFNA4P52798 201 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 WFDC2Q14508 124 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 CCDC140Q96MF4 163 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 MYMXA0A1B0GTQ4 84 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 OR11H12B2RN74 326 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 OR11H1Q8NG94 326 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 OR11H2Q8NH07 326 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 EEF1AKMT3Q96AZ1 226 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 TOMM6Q96B49 74 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 C20orf78Q9BR46 151 aa13.49□□□□□ -0.25
SDCBP-202ENST00000413219 IGHV3-66A0A0C4DH42 116 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 FAM90A27PA6NNH2 459 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 ECSCRQ19T08 205 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 CLEC19AQ6UXS0 136 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 ZNF318Q5VUA4 2279 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 TRBV7-1A0A0A6YYK4 115 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 ATP6V0E1O15342 81 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 AZU1P20160 251 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 C11orf71Q6IPW1 123 aa13.48□□□□□ -0.25
SDCBP-202ENST00000413219 APC2O95996 2303 aa13.47□□□□□ -0.25
SDCBP-202ENST00000413219 POLEQ07864 2286 aa13.47□□□□□ -0.25
SDCBP-202ENST00000413219 CENPVL3A0A0U1RRI6 287 aa13.47□□□□□ -0.25
SDCBP-202ENST00000413219 GAGE12HA6NDE8 117 aa13.47□□□□□ -0.25
SDCBP-202ENST00000413219 GRNP28799 593 aaKnown RBP13.47□□□□□ -0.25
SDCBP-202ENST00000413219 GAGE13Q4V321 117 aa13.47□□□□□ -0.25
SDCBP-202ENST00000413219 SPATA25Q9BR10 227 aa13.47□□□□□ -0.25
SDCBP-202ENST00000413219 SIRPDQ9H106 197 aa13.47□□□□□ -0.25
SDCBP-202ENST00000413219 H3BMG7 143 aa13.46□□□□□ -0.25
SDCBP-202ENST00000413219 H3BVH4 76 aa13.46□□□□□ -0.25
SDCBP-202ENST00000413219 NEXN-AS1Q8NBZ9 246 aa13.46□□□□□ -0.25
SDCBP-202ENST00000413219 SCGB3A1Q96QR1 104 aa13.46□□□□□ -0.25
SDCBP-202ENST00000413219 ATP6V0BQ99437 205 aa13.46□□□□□ -0.25
SDCBP-202ENST00000413219 TSSC4Q9Y5U2 329 aaPredicted RBP13.46□□□□□ -0.25
SDCBP-202ENST00000413219 MAP1BP46821 2468 aaKnown RBP13.46□□□□□ -0.25
SDCBP-202ENST00000413219 SUMO2P61956 95 aaKnown RBP13.46□□□□□ -0.26
SDCBP-202ENST00000413219 PRO0461Q9UI25 63 aa13.46□□□□□ -0.26
SDCBP-202ENST00000413219 KALRNO60229 2985 aa13.45□□□□□ -0.26
SDCBP-202ENST00000413219 C9orf139Q6ZV77 190 aa13.45□□□□□ -0.26
SDCBP-202ENST00000413219 MGAQ8IWI9 3026 aa13.45□□□□□ -0.26
SDCBP-202ENST00000413219 GTSF1LQ9H1H1 148 aa13.44□□□□□ -0.26
SDCBP-202ENST00000413219 DMXL2Q8TDJ6 3036 aa13.44□□□□□ -0.26
SDCBP-202ENST00000413219 IGHV3OR16-13A0A075B7E8 117 aa13.44□□□□□ -0.26
SDCBP-202ENST00000413219 IGHV3-74A0A0B4J1X5 117 aa13.44□□□□□ -0.26
SDCBP-202ENST00000413219 M0R381 172 aa13.44□□□□□ -0.26
SDCBP-202ENST00000413219 ITLN2Q8WWU7 325 aaPredicted RBP13.44□□□□□ -0.26
SDCBP-202ENST00000413219 RASL10AQ92737 203 aa13.44□□□□□ -0.26
SDCBP-202ENST00000413219 SPAG8Q99932 426 aaPredicted RBP13.44□□□□□ -0.26
SDCBP-202ENST00000413219 ARHGAP32A7KAX9 2087 aa13.44□□□□□ -0.26
SDCBP-202ENST00000413219 TPRP12270 2363 aaKnown RBP13.44□□□□□ -0.26
SDCBP-202ENST00000413219 MED14OSP0DP75 135 aa13.43□□□□□ -0.26
SDCBP-202ENST00000413219 ZFP36P26651 326 aaKnown RBP13.43□□□□□ -0.26
SDCBP-202ENST00000413219 UBE2E1P51965 193 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms