RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 E9PLD3 99 aa13.77□□□□□ -0.21
SQSTM1-202ENST00000389805 F8W1H4 67 aa13.77□□□□□ -0.21
SQSTM1-202ENST00000389805 IGKV2-40A0A087WW87 121 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 IGKV2D-40P01614 121 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 IGKCP01834 107 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 SCGB2A2Q13296 93 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 DYNAPQ8N1N2 210 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 Q8TAT8 98 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 CFHR4Q92496 578 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 TIMD4Q96H15 378 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 TMEM14CQ9P0S9 112 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 ITPR1Q14643 2758 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 TMEM8BA6NDV4 472 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 NPIPB5A8MRT5 1133 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 K7EIM0 57 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 C20orf78Q9BR46 151 aa13.76□□□□□ -0.21
SQSTM1-202ENST00000389805 TRAV40A0A0B4J280 105 aa13.75□□□□□ -0.21
SQSTM1-202ENST00000389805 IGFL4Q6B9Z1 124 aa13.75□□□□□ -0.21
SQSTM1-202ENST00000389805 C11orf71Q6IPW1 123 aa13.75□□□□□ -0.21
SQSTM1-202ENST00000389805 CRYBA4P53673 196 aa13.75□□□□□ -0.21
SQSTM1-202ENST00000389805 SPATA25Q9BR10 227 aa13.75□□□□□ -0.21
SQSTM1-202ENST00000389805 NBR2O15453 112 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 IL4P05112 153 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 EGR2P11161 476 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 GAGE13Q4V321 117 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 SFTA2Q6UW10 78 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 HIGD1BQ9P298 99 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 ZFP36P26651 326 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 UCNP55089 124 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 C12orf74Q32Q52 190 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 OR11H6Q8NGC7 330 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 A0A1B0GWB2 263 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 MAP1LC3AQ9H492 121 aa13.74□□□□□ -0.21
SQSTM1-202ENST00000389805 SPG11Q96JI7 2443 aa13.73□□□□□ -0.21
SQSTM1-202ENST00000389805 TMEM158Q8WZ71 300 aa13.73□□□□□ -0.21
SQSTM1-202ENST00000389805 HIST1H4GQ99525 98 aa13.73□□□□□ -0.21
SQSTM1-202ENST00000389805 SHANK2-AS3Q9BTD1 123 aa13.73□□□□□ -0.21
SQSTM1-202ENST00000389805 TM2D2Q9BX73 214 aa13.73□□□□□ -0.21
SQSTM1-202ENST00000389805 NCBP2LA6PVI3 153 aaKnown RBP13.72□□□□□ -0.21
SQSTM1-202ENST00000389805 ZNF80P51504 273 aaPredicted RBP13.72□□□□□ -0.21
SQSTM1-202ENST00000389805 TRBV6-1A0A0K0K1D8 114 aa13.72□□□□□ -0.21
SQSTM1-202ENST00000389805 IGHV3-23P01764 117 aa13.72□□□□□ -0.21
SQSTM1-202ENST00000389805 RNF5Q99942 180 aa13.72□□□□□ -0.21
SQSTM1-202ENST00000389805 PRTN3P24158 256 aa13.71□□□□□ -0.21
SQSTM1-202ENST00000389805 NDPQ00604 133 aa13.71□□□□□ -0.21
SQSTM1-202ENST00000389805 MRPL35Q9NZE8 188 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-202ENST00000389805 VMO1Q7Z5L0 202 aa13.71□□□□□ -0.21
SQSTM1-202ENST00000389805 GEMIN7Q9H840 131 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-202ENST00000389805 DPM2O94777 84 aa13.71□□□□□ -0.22
SQSTM1-202ENST00000389805 ORM1P02763 201 aa13.71□□□□□ -0.22
SQSTM1-202ENST00000389805 ZMAT4Q9H898 229 aa13.71□□□□□ -0.22
SQSTM1-202ENST00000389805 ODF3BA8MYP8 253 aa13.7□□□□□ -0.22
SQSTM1-202ENST00000389805 H3BRN7 92 aa13.7□□□□□ -0.22
SQSTM1-202ENST00000389805 NDUFA3O95167 84 aa13.7□□□□□ -0.22
SQSTM1-202ENST00000389805 TNFRSF6BO95407 300 aa13.7□□□□□ -0.22
SQSTM1-202ENST00000389805 C5orf64Q2M2E5 130 aa13.7□□□□□ -0.22
SQSTM1-202ENST00000389805 RNF185Q96GF1 192 aa13.7□□□□□ -0.22
SQSTM1-202ENST00000389805 AAMDCQ9H7C9 122 aa13.7□□□□□ -0.22
SQSTM1-202ENST00000389805 ZNF491Q8N8L2 437 aa13.69□□□□□ -0.22
SQSTM1-202ENST00000389805 RNF125Q96EQ8 232 aa13.69□□□□□ -0.22
SQSTM1-202ENST00000389805 APOMO95445 188 aa13.69□□□□□ -0.22
SQSTM1-202ENST00000389805 FANCD2OSQ96PS1 177 aa13.69□□□□□ -0.22
SQSTM1-202ENST00000389805 HLA-DMBP28068 263 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 SYT8Q8NBV8 401 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 NPBQ8NG41 125 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 M0R1W7 72 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 TTC9CQ8N5M4 171 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 IGHV3OR16-8A0A075B7F1 116 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 MRAP2Q96G30 205 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 UBTD1Q9HAC8 227 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 PRO0461Q9UI25 63 aa13.68□□□□□ -0.22
SQSTM1-202ENST00000389805 IGHV3-35A0A0C4DH35 117 aa13.67□□□□□ -0.22
SQSTM1-202ENST00000389805 RRN3P1Q2M238 152 aa13.67□□□□□ -0.22
SQSTM1-202ENST00000389805 PIFOQ8TCI5 191 aa13.67□□□□□ -0.22
SQSTM1-202ENST00000389805 GLMPQ8WWB7 406 aa13.67□□□□□ -0.22
SQSTM1-202ENST00000389805 PRR25Q96S07 402 aa13.67□□□□□ -0.22
SQSTM1-202ENST00000389805 MRPS12O15235 138 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-202ENST00000389805 CYSLTR1Q9Y271 337 aa13.66□□□□□ -0.22
SQSTM1-202ENST00000389805 TRAV26-2A0A0B4J265 109 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 EFNA4P52798 201 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 LYPD1Q8N2G4 141 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 F8W735 103 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 MT-ATP8P03928 68 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 SPINK8P0C7L1 97 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 CENPEQ02224 2701 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 TCTEX1D4Q5JR98 221 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 DTX2Q86UW9 622 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 ZNF575Q86XF7 245 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 PTH2Q96A98 100 aa13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 SRSF8Q9BRL6 282 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-202ENST00000389805 TMEM238LA0A1B0GVL6 79 aa13.64□□□□□ -0.23
SQSTM1-202ENST00000389805 ZNF502Q8TBZ5 544 aa13.64□□□□□ -0.23
SQSTM1-202ENST00000389805 IGLV11-55A0A075B6I3 123 aa13.64□□□□□ -0.23
SQSTM1-202ENST00000389805 C8orf86Q6ZUL3 223 aa13.64□□□□□ -0.23
SQSTM1-202ENST00000389805 KLK15Q9H2R5 256 aa13.64□□□□□ -0.23
SQSTM1-202ENST00000389805 NXT2Q9NPJ8 142 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-202ENST00000389805 IGLC6P0CF74 106 aa13.63□□□□□ -0.23
SQSTM1-202ENST00000389805 GATA3P23771 443 aa13.63□□□□□ -0.23
SQSTM1-202ENST00000389805 ZNF418Q8TF45 676 aaPredicted RBP13.63□□□□□ -0.23
SQSTM1-202ENST00000389805 C19orf84I3L1E1 186 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms