RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 IGLC2P0DOY2 106 aa6.91□□□□□ -1.3
USP4-202ENST00000351842 MEF2BQ02080 365 aaPredicted RBP6.91□□□□□ -1.3
USP4-202ENST00000351842 COA6Q5JTJ3 125 aaKnown RBP6.91□□□□□ -1.3
USP4-202ENST00000351842 F6UZH7 168 aa6.9□□□□□ -1.3
USP4-202ENST00000351842 IFNA1P01562 189 aa6.9□□□□□ -1.3
USP4-202ENST00000351842 SNRPD3P62318 126 aaKnown RBP6.9□□□□□ -1.3
USP4-202ENST00000351842 KIR3DS1Q14943 382 aa6.9□□□□□ -1.3
USP4-202ENST00000351842 VGLL1Q99990 258 aa6.9□□□□□ -1.3
USP4-202ENST00000351842 M0R2Z0 102 aa6.9□□□□□ -1.31
USP4-202ENST00000351842 LGALS9O00182 355 aa6.9□□□□□ -1.31
USP4-202ENST00000351842 PFN1P07737 140 aaKnown RBP6.9□□□□□ -1.31
USP4-202ENST00000351842 CSN1S1P47710 185 aa6.9□□□□□ -1.31
USP4-202ENST00000351842 LCN12Q6JVE5 192 aa6.9□□□□□ -1.31
USP4-202ENST00000351842 HIST3H2BBQ8N257 126 aa6.9□□□□□ -1.31
USP4-202ENST00000351842 NAGKQ9UJ70 344 aa6.9□□□□□ -1.31
USP4-202ENST00000351842 ZNF331Q9NQX6 463 aaPredicted RBP6.89□□□□□ -1.31
USP4-202ENST00000351842 TMSB15BA0A087X1C1 80 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 TGIF2-C20orf24A0A0A6YYL0 155 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 OR11H12B2RN74 326 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 K7EMT4 169 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 ISLRO14498 428 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 PRM2P04554 102 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 KLK9Q2XQG4 91 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 PACRGQ96M98 296 aaPredicted RBP6.89□□□□□ -1.31
USP4-202ENST00000351842 NAT8Q9UHE5 227 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 KLK9Q9UKQ9 250 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 TIMM8BQ9Y5J9 83 aaPredicted RBP6.89□□□□□ -1.31
USP4-202ENST00000351842 TRAV8-2A0A0B4J237 113 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 ZNF705GA8MUZ8 300 aaPredicted RBP6.89□□□□□ -1.31
USP4-202ENST00000351842 RIPPLY3P57055 190 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 UBE2G1P62253 170 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 Q6ZQT7 251 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 MANBALQ9NQG1 85 aa6.89□□□□□ -1.31
USP4-202ENST00000351842 OR4C46A6NHA9 309 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 TYMSP04818 313 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 SPINK13Q1W4C9 94 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 PRR31Q5SQ13 230 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 C9orf66Q5T8R8 295 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 GTSCR1Q86UQ5 136 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 FAM210BQ96KR6 192 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 SMIM7Q9BQ49 75 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 SRD5A3Q9H8P0 318 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 XCL2Q9UBD3 114 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 U3KQE9 123 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 MRPS12O15235 138 aaKnown RBP6.88□□□□□ -1.31
USP4-202ENST00000351842 OR5I1Q13606 314 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 DCANP1Q8TF63 244 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 NUDT11Q96G61 164 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 SPRY2O43597 315 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 IGLV1-51P01701 117 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 ID1P41134 155 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 JOSD1Q15040 202 aaPredicted RBP6.88□□□□□ -1.31
USP4-202ENST00000351842 C1orf194Q5T5A4 169 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 TPPP3Q9BW30 176 aa6.88□□□□□ -1.31
USP4-202ENST00000351842 GZMBP10144 247 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 CNN1P51911 297 aaKnown RBP6.87□□□□□ -1.31
USP4-202ENST00000351842 ADIRFQ15847 76 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 ODF3L2Q3SX64 289 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 MUC21Q5SSG8 566 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 EBLN2Q6P2I7 272 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 FRZBQ92765 325 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 ATP6V0BQ99437 205 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 VPS25Q9BRG1 176 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 MAP6D1Q9H9H5 199 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 MUC21A0A0G2JKD1 596 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 MUC21A0A140T8X8 626 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 PEX7O00628 323 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 TRGC2P03986 189 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 PSG3Q16557 428 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 EPDR1Q9UM22 224 aa6.87□□□□□ -1.31
USP4-202ENST00000351842 TRGC1P0CF51 173 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 STHQ8IWL8 128 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 TMEM75Q8N9X5 138 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 OR10J6PQ8NGY7 276 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 C8orf49Q96NF6 230 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 IMMP2LQ96T52 175 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 PARLQ9H300 379 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 K7EQG2 157 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 TCRAP04437 139 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 KRTAP10-11P60412 298 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 RPL23P62829 140 aaKnown RBP6.86□□□□□ -1.31
USP4-202ENST00000351842 PSG9Q00887 426 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 TMEM241Q24JQ0 296 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 C5orf17Q8NAS9 161 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 ANAPC16Q96DE5 110 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 TXNDC17Q9BRA2 123 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 CMYA5Q8N3K9 4069 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 EMP1P54849 157 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 CENPWQ5EE01 88 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 TMEM78Q5T7P6 136 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 OTORQ9NRC9 128 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 TMEM14CQ9P0S9 112 aa6.86□□□□□ -1.31
USP4-202ENST00000351842 MEGF8Q7Z7M0 2845 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 C20orf202A1L168 122 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 RNASE4P34096 147 aaKnown RBP6.85□□□□□ -1.31
USP4-202ENST00000351842 ERVFC1-1P60608 527 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 GPR82Q96P67 336 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 HIST1H2BLQ99880 126 aa6.85□□□□□ -1.31
USP4-202ENST00000351842 SPAG8Q99932 426 aaPredicted RBP6.85□□□□□ -1.31
USP4-202ENST00000351842 ZNF256Q9Y2P7 627 aaPredicted RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 980 ms