RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZNF25P17030 456 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-201ENST00000341247 EDN2P20800 178 aa7.93□□□□□ -1.14
LIMA1-201ENST00000341247 TMEM78Q5T7P6 136 aa7.93□□□□□ -1.14
LIMA1-201ENST00000341247 ZNF738Q8NE65 137 aa7.93□□□□□ -1.14
LIMA1-201ENST00000341247 C11orf21Q9P2W6 132 aa7.93□□□□□ -1.14
LIMA1-201ENST00000341247 NPYP01303 97 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 SRSF1Q07955 248 aaKnown RBP eCLIP7.92□□□□□ -1.14
LIMA1-201ENST00000341247 Q6AWC8 147 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 PRSS57Q6UWY2 283 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 WFDC12Q8WWY7 111 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 MAP1LC3CQ9BXW4 147 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 SIGLEC8Q9NYZ4 499 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 SONP18583 2426 aaKnown RBP7.92□□□□□ -1.14
LIMA1-201ENST00000341247 F6UB75 175 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 SNAI2O43623 268 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 S100A7P31151 101 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 C10orf99Q6UWK7 81 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 Q6ZVH6 145 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 ZNF575Q86XF7 245 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 KLHDC1Q8N7A1 406 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 C20orf173Q96LM9 149 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 ORMDL3Q8N138 153 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 SLC50A1Q9BRV3 221 aa7.92□□□□□ -1.14
LIMA1-201ENST00000341247 RPLP1P05386 114 aaKnown RBP7.91□□□□□ -1.14
LIMA1-201ENST00000341247 RAB9AP51151 201 aa7.91□□□□□ -1.14
LIMA1-201ENST00000341247 TM4SF20Q53R12 229 aa7.91□□□□□ -1.14
LIMA1-201ENST00000341247 OR4X2Q8NGF9 303 aa7.91□□□□□ -1.14
LIMA1-201ENST00000341247 IGKV3D-20A0A0C4DH25 116 aa7.91□□□□□ -1.14
LIMA1-201ENST00000341247 UFC1Q9Y3C8 167 aa7.91□□□□□ -1.14
LIMA1-201ENST00000341247 STPG4Q8N801 248 aa7.91□□□□□ -1.14
LIMA1-201ENST00000341247 C20orf202A1L168 122 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 IGHV4-59P01825 116 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 TSPOP30536 169 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 OR10AG1Q8NH19 301 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 C18orf15Q96N68 181 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 MEGF9Q9H1U4 602 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 LAMTOR2Q9Y2Q5 125 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 CCDC168Q8NDH2 2452 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 TRAV26-2A0A0B4J265 109 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 TGFAP01135 160 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 KIR3DS1Q14943 382 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 PRR9Q5T870 116 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 HSPB8Q9UJY1 196 aa7.9□□□□□ -1.14
LIMA1-201ENST00000341247 A0A087X0K7 114 aa7.9□□□□□ -1.15
LIMA1-201ENST00000341247 A0A1B0GW15 77 aa7.9□□□□□ -1.15
LIMA1-201ENST00000341247 FAM223BA6NKX1 122 aa7.9□□□□□ -1.15
LIMA1-201ENST00000341247 IGLC6P0CF74 106 aa7.9□□□□□ -1.15
LIMA1-201ENST00000341247 ZNF493Q6ZR52 646 aa7.9□□□□□ -1.15
LIMA1-201ENST00000341247 FAM223AQ8IWN6 122 aa7.9□□□□□ -1.15
LIMA1-201ENST00000341247 TMEM191AQ9H0A3 160 aa7.9□□□□□ -1.15
LIMA1-201ENST00000341247 A6NDX4 124 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 B4DSR2 109 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 MYO9AB2RTY4 2548 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 NDUFS8O00217 210 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 RPS20P60866 119 aaKnown RBP7.89□□□□□ -1.15
LIMA1-201ENST00000341247 HIST1H1AQ02539 215 aaPredicted RBP7.89□□□□□ -1.15
LIMA1-201ENST00000341247 DEFB112Q30KQ8 113 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 DUX5Q96PT3 197 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 A0A096LNJ9 63 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 HSBP1L1C9JCN9 74 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 H3BVH4 76 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 IGHG2P01859 326 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 C19orf54Q5BKX5 351 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 ERASQ7Z444 233 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 ZNF747Q9BV97 191 aa7.89□□□□□ -1.15
LIMA1-201ENST00000341247 M0QZK8 103 aa7.88□□□□□ -1.15
LIMA1-201ENST00000341247 CYB5R2Q6BCY4 276 aa7.88□□□□□ -1.15
LIMA1-201ENST00000341247 NPFFR1Q9GZQ6 430 aa7.88□□□□□ -1.15
LIMA1-201ENST00000341247 U3KQE9 123 aa7.88□□□□□ -1.15
LIMA1-201ENST00000341247 DMRTA1Q5VZB9 504 aa7.88□□□□□ -1.15
LIMA1-201ENST00000341247 GPHB5Q86YW7 130 aa7.88□□□□□ -1.15
LIMA1-201ENST00000341247 RNF185Q96GF1 192 aa7.88□□□□□ -1.15
LIMA1-201ENST00000341247 RHPN1-AS1Q9BWJ2 59 aa7.88□□□□□ -1.15
LIMA1-201ENST00000341247 RNF223E7ERA6 249 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 SPANXN1Q5VSR9 72 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 KRTAP10-9P60411 292 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 CACNG7P62955 275 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 LINC01559Q495D7 138 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 COX8CQ7Z4L0 72 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 ITPR2Q14571 2701 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 FBLL1A6NHQ2 334 aaKnown RBP7.87□□□□□ -1.15
LIMA1-201ENST00000341247 M0R381 172 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 CRXO43186 299 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-201ENST00000341247 COL5A1-AS1Q5SY13 56 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 HIST2H2BDQ6DRA6 164 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 GATD1Q8NB37 220 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 DEFB104AQ8WTQ1 72 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 TMEM190Q8WZ59 177 aa7.87□□□□□ -1.15
LIMA1-201ENST00000341247 NDUFA4O00483 81 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 RNASE4P34096 147 aaKnown RBP7.86□□□□□ -1.15
LIMA1-201ENST00000341247 PET117Q6UWS5 81 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 TMEM208Q9BTX3 173 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 RBAKDNA6NC62 111 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 IGKV3-20P01619 116 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 SETD2Q9BYW2 2564 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-201ENST00000341247 TNFRSF6BO95407 300 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 NPSP0C0P6 89 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 KLK9Q2XQG4 91 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 ARL6IP6Q8N6S5 226 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 OR10J6PQ8NGY7 276 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms