RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 EML6Q6ZMW3 1958 aa8.55□□□□□ -1.04
CD44-201ENST00000263398 NDUFA4O00483 81 aa8.55□□□□□ -1.04
CD44-201ENST00000263398 ADAMTSL5Q6ZMM2 481 aa8.55□□□□□ -1.04
CD44-201ENST00000263398 FREM1Q5H8C1 2179 aa8.55□□□□□ -1.04
CD44-201ENST00000263398 CHD7Q9P2D1 2997 aa8.55□□□□□ -1.04
CD44-201ENST00000263398 PHLDA1Q8WV24 401 aaPredicted RBP8.55□□□□□ -1.04
CD44-201ENST00000263398 TMEM141Q96I45 108 aa8.55□□□□□ -1.04
CD44-201ENST00000263398 GTSF1LQ9H1H1 148 aa8.55□□□□□ -1.04
CD44-201ENST00000263398 NCOA6Q14686 2063 aaPredicted RBP8.54□□□□□ -1.04
CD44-201ENST00000263398 PMVKQ15126 192 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 Q5PR19 223 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 CSPG4Q6UVK1 2322 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 IGLC7A0M8Q6 106 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 SDHAF1A6NFY7 115 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 K7EN84 100 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 SPINK13Q1W4C9 94 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 DYSFO75923 2080 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 NPYP01303 97 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 RPL35AP18077 110 aaKnown RBP8.54□□□□□ -1.04
CD44-201ENST00000263398 KRTAP27-1Q3LI81 207 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 SLX1AQ9BQ83 275 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 CST9LQ9H4G1 147 aa8.54□□□□□ -1.04
CD44-201ENST00000263398 C9orf118A6NHY6 69 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 LGALS1P09382 135 aaKnown RBP8.53□□□□□ -1.04
CD44-201ENST00000263398 SMIM2Q9BVW6 85 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 C9JAW5 83 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 LEPROTO15243 131 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 LTAP01374 205 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 OCIAD2Q56VL3 154 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 OBSL1O75147 1896 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 TECTAO75443 2155 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 ANXA2RQ3ZCQ2 193 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 NUP210Q8TEM1 1887 aaPredicted RBP8.53□□□□□ -1.04
CD44-201ENST00000263398 WIPF2Q8TF74 440 aaPredicted RBP8.53□□□□□ -1.04
CD44-201ENST00000263398 PCDH15Q96QU1 1955 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 UNC80Q8N2C7 3258 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 PIEZO2Q9H5I5 2752 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 TRBV20-1A0A075B6N2 111 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 IGHV1OR15-1A0A075B7D0 117 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 KNCNA6PVL3 124 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 F8VRH5 84 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 OVOL2Q9BRP0 275 aa8.53□□□□□ -1.04
CD44-201ENST00000263398 MRPL35Q9NZE8 188 aaKnown RBP8.52□□□□□ -1.05
CD44-201ENST00000263398 KIAA1671Q9BY89 1806 aa8.52□□□□□ -1.05
CD44-201ENST00000263398 SSBP2P81877 361 aaPredicted RBP8.52□□□□□ -1.05
CD44-201ENST00000263398 VGLL1Q99990 258 aa8.52□□□□□ -1.05
CD44-201ENST00000263398 KLF2Q9Y5W3 355 aaPredicted RBP8.52□□□□□ -1.05
CD44-201ENST00000263398 CHD3Q12873 2000 aaKnown RBP8.52□□□□□ -1.05
CD44-201ENST00000263398 TRAV8-3A0A0A6YYJ7 113 aa8.52□□□□□ -1.05
CD44-201ENST00000263398 C1orf122Q6ZSJ8 110 aa8.52□□□□□ -1.05
CD44-201ENST00000263398 CTSZQ9UBR2 303 aa8.52□□□□□ -1.05
CD44-201ENST00000263398 LTBP2Q14767 1821 aa8.52□□□□□ -1.05
CD44-201ENST00000263398 I3L3M4 83 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 PLA2G2EQ9NZK7 142 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 C22orf46C9J442 243 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 NPSP0C0P6 89 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 CDKN1BP46527 198 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 PIP4P1Q86T03 277 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 C11orf68Q9H3H3 251 aaKnown RBP8.51□□□□□ -1.05
CD44-201ENST00000263398 TNCP24821 2201 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 LHBP01229 141 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 HLA-DRB4P13762 266 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 XCL2Q9UBD3 114 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 HLA-DRB4X5D2U9 266 aa8.51□□□□□ -1.05
CD44-201ENST00000263398 GAGE1Q13065 139 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 BVES-AS1Q5T3Y7 98 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 MYO18BQ8IUG5 2567 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 SONP18583 2426 aaKnown RBP8.5□□□□□ -1.05
CD44-201ENST00000263398 TRAV26-2A0A0B4J265 109 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 C20orf78Q9BR46 151 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 RNF223E7ERA6 249 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 KLF5Q13887 457 aaPredicted RBP8.5□□□□□ -1.05
CD44-201ENST00000263398 ETDBQ3ZM63 59 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 ASPHD1Q5U4P2 390 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 IGFL2Q6UWQ7 119 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 ZNF747Q9BV97 191 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 KLK9Q9UKQ9 250 aa8.5□□□□□ -1.05
CD44-201ENST00000263398 SS18Q15532 418 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 SPINK8P0C7L1 97 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 DEFB130BP0DP73 79 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 DEFB130AP0DP74 79 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 TCTEX1D4Q5JR98 221 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 OR11H6Q8NGC7 330 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 ZNF625Q96I27 306 aaPredicted RBP8.49□□□□□ -1.05
CD44-201ENST00000263398 C17orf77Q96MU5 243 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 NDUFS7O75251 213 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 TAL2Q16559 108 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 DNAJC30Q96LL9 226 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 LENEPQ9Y5L5 61 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 FAM120AOSQ5T036 256 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 LAMTOR3Q9UHA4 124 aa8.49□□□□□ -1.05
CD44-201ENST00000263398 KIR2DL5BA0A0G2JN68 375 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 KIR2DL5BA0A0G2JPC4 375 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 LINC01619G3V211 115 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 K7EP13 123 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 SIVA1O15304 175 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 KIR2DL5AQ8N109 375 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 RNF114Q9Y508 228 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 SHISA9B4DS77 424 aa8.48□□□□□ -1.05
CD44-201ENST00000263398 AGPAT4-IT1Q9H0P7 198 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms