RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 LYRM7Q5U5X0 104 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 C1orf140Q5VVS0 124 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 Q5XG85 94 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 GOLT1AQ6ZVE7 132 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 TRAPPC5Q8IUR0 188 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 LRRC18Q8N456 261 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 FAM216BQ8N7L0 139 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 OR8J2Q8NGG1 315 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 OR4K15Q8NH41 348 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 GNPDA2Q8TDQ7 276 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 DDI1Q8WTU0 396 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 ARL5BQ96KC2 179 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 GPX7Q96SL4 187 aaPredicted RBP-0.27□□□□□ -2.45
VPS35-212ENST00000640313 SIGMAR1Q99720 223 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 CMSS1Q9BQ75 279 aaKnown RBP-0.27□□□□□ -2.45
VPS35-212ENST00000640313 TRIM4Q9C037 500 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 CST11Q9H112 138 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 NKIRAS1Q9NYS0 192 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 MRPL35Q9NZE8 188 aaKnown RBP-0.27□□□□□ -2.45
VPS35-212ENST00000640313 NAT8BQ9UHF3 227 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 PTPRFP10586 1907 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 OBSL1O75147 1896 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 PKDREJQ9NTG1 2253 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 LAMC3Q9Y6N6 1575 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 MXRA5Q9NR99 2828 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 PLB1Q6P1J6 1458 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 ADGRL3Q9HAR2 1447 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 DOCK4Q8N1I0 1966 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 DNHD1Q96M86 4753 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 RTL1A6NKG5 1358 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 SVEP1Q4LDE5 3571 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 RYR2Q92736 4967 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 ECM29Q5VYK3 1845 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 A0A096LPI6 279 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 CETN3O15182 167 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 RER1O15258 196 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 LYRM1O43325 122 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 CST8O60676 142 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 GGCTO75223 188 aaKnown RBP-0.28□□□□□ -2.45
VPS35-212ENST00000640313 NIPSNAP2O75323 286 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 IFNA7P01567 189 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 TRGC2P03986 189 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 TPM3P06753 285 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 RPS17P08708 135 aaKnown RBP-0.28□□□□□ -2.45
VPS35-212ENST00000640313 CST2P09228 141 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 MPC1LP0DKB6 136 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 ETV6P41212 452 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 CCL7P80098 99 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 EMX2Q04743 252 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 KLKP1Q107X0 134 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 KLRD1Q13241 179 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 COTL1Q14019 142 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 POU6F1Q14863 301 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 MSMO1Q15800 293 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 BCL2L15Q5TBC7 163 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 FKBP1CQ5VVH2 108 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 IZUMO2Q6UXV1 221 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 C5orf17Q8NAS9 161 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 TMEM229BQ8NBD8 167 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 OR10X1Q8NGY0 326 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 GRPEL2Q8TAA5 225 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 NAT14Q8WUY8 206 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 DIRC1Q969H9 104 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 CCDC42Q96M95 316 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 ZNF714Q96N38 554 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 LYSTQ99698 3801 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 OTORQ9NRC9 128 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 TMEM14BQ9NUH8 114 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 IL20Q9NYY1 176 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 MRPL36Q9P0J6 103 aaKnown RBP-0.28□□□□□ -2.45
VPS35-212ENST00000640313 COMMD3Q9UBI1 195 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 SLC22A13Q9Y226 551 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 DNAH7Q8WXX0 4024 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 RNF213Q63HN8 5207 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 EP300Q09472 2414 aaPredicted RBP-0.28□□□□□ -2.45
VPS35-212ENST00000640313 NISCHQ9Y2I1 1504 aa-0.28□□□□□ -2.45
VPS35-212ENST00000640313 SPTBN1Q01082 2364 aaKnown RBP-0.28□□□□□ -2.45
VPS35-212ENST00000640313 TANC1Q9C0D5 1861 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 SOGA1O94964 1423 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 RTL9Q8NET4 1388 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 SPTA1P02549 2419 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 CREBBPQ92793 2442 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 GVQW2A0A096LPI5 108 aaPredicted RBP-0.29□□□□□ -2.46
VPS35-212ENST00000640313 PRORSD1PA6NEY8 169 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 HIGD1CA8MV81 97 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 HIST1H2BKO60814 126 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 RPP14O95059 124 aaKnown RBP-0.29□□□□□ -2.46
VPS35-212ENST00000640313 HIST1H2BJP06899 126 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 ELOF1P60002 83 aaKnown RBP-0.29□□□□□ -2.46
VPS35-212ENST00000640313 NCALDP61601 193 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 SNRPD3P62318 126 aaKnown RBP-0.29□□□□□ -2.46
VPS35-212ENST00000640313 TPM4P67936 248 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 HBBP68871 147 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 COX6A2Q02221 97 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 TAF1AQ15573 450 aaPredicted RBP-0.29□□□□□ -2.46
VPS35-212ENST00000640313 NEDD8Q15843 81 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 RGS21Q2M5E4 152 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 HACD4Q5VWC8 232 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 LYPD5Q6UWN5 251 aa-0.29□□□□□ -2.46
VPS35-212ENST00000640313 TCTEX1D1Q8N7M0 179 aa-0.29□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms