RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 S100A9P06702 114 aaKnown RBP15.06■□□□□ 0
CLN3-250ENST00000636839 URGCP-MRPS24S4R325 110 aa15.06■□□□□ 0
CLN3-250ENST00000636839 A0A087WWC5 75 aa15.05■□□□□ 0
CLN3-250ENST00000636839 ERVFC1-1P60608 527 aa15.05■□□□□ 0
CLN3-250ENST00000636839 RBPMS2Q6ZRY4 209 aaKnown RBP15.05■□□□□ 0
CLN3-250ENST00000636839 ZC2HC1AQ96GY0 325 aa15.05■□□□□ 0
CLN3-250ENST00000636839 TRRAPQ9Y4A5 3859 aa15.05■□□□□ -0
CLN3-250ENST00000636839 MT-ND4LP03901 98 aa15.05■□□□□ -0
CLN3-250ENST00000636839 PSMG4Q5JS54 123 aa15.05■□□□□ -0
CLN3-250ENST00000636839 GDF5OSQ5U4N7 250 aa15.05■□□□□ -0
CLN3-250ENST00000636839 TMEM183AQ8IXX5 376 aa15.05■□□□□ -0
CLN3-250ENST00000636839 ARL6IP6Q8N6S5 226 aa15.05■□□□□ -0
CLN3-250ENST00000636839 MRPL53Q96EL3 112 aaKnown RBP15.05■□□□□ -0
CLN3-250ENST00000636839 PF4P02776 101 aa15.04■□□□□ -0
CLN3-250ENST00000636839 SMCO4Q9NRQ5 59 aa15.04■□□□□ -0
CLN3-250ENST00000636839 TRBV6-1A0A0K0K1D8 114 aa15.04■□□□□ -0
CLN3-250ENST00000636839 SAP30O75446 220 aa15.04■□□□□ -0
CLN3-250ENST00000636839 LINC00482Q8N8I6 264 aa15.04■□□□□ -0
CLN3-250ENST00000636839 PRR25Q96S07 402 aa15.04■□□□□ -0
CLN3-250ENST00000636839 SERTM2A0A1B0GWG4 89 aa15.03■□□□□ -0
CLN3-250ENST00000636839 CD33P20138 364 aa15.03■□□□□ -0
CLN3-250ENST00000636839 CRIP1P50238 77 aa15.03■□□□□ -0
CLN3-250ENST00000636839 OR10G8Q8NGN5 311 aa15.03■□□□□ -0
CLN3-250ENST00000636839 H7BYZ3 331 aa15.02■□□□□ -0
CLN3-250ENST00000636839 CA1P00915 261 aaPredicted RBP15.02■□□□□ -0
CLN3-250ENST00000636839 ID1P41134 155 aa15.02■□□□□ -0
CLN3-250ENST00000636839 CLEC5AQ9NY25 188 aa15.02■□□□□ -0
CLN3-250ENST00000636839 ZFP30Q9Y2G7 519 aa15.02■□□□□ -0
CLN3-250ENST00000636839 RBAKDNA6NC62 111 aa15.02□□□□□ -0.01
CLN3-250ENST00000636839 HIST1H1AQ02539 215 aaPredicted RBP15.02□□□□□ -0.01
CLN3-250ENST00000636839 NUDT10Q8NFP7 164 aa15.02□□□□□ -0.01
CLN3-250ENST00000636839 NUDT11Q96G61 164 aa15.02□□□□□ -0.01
CLN3-250ENST00000636839 V9GYV3 84 aa15.02□□□□□ -0.01
CLN3-250ENST00000636839 ZNF80P51504 273 aaPredicted RBP15.01□□□□□ -0.01
CLN3-250ENST00000636839 PAFAH1B2P68402 229 aa15.01□□□□□ -0.01
CLN3-250ENST00000636839 ZNF124Q15973 351 aa15.01□□□□□ -0.01
CLN3-250ENST00000636839 IBA57Q5T440 356 aaKnown RBP15.01□□□□□ -0.01
CLN3-250ENST00000636839 C9orf47Q6ZRZ4 202 aa15.01□□□□□ -0.01
CLN3-250ENST00000636839 OR8A1Q8NGG7 326 aa15.01□□□□□ -0.01
CLN3-250ENST00000636839 ANAPC16Q96DE5 110 aa15□□□□□ -0.01
CLN3-250ENST00000636839 YPEL4Q96NS1 127 aa15□□□□□ -0.01
CLN3-250ENST00000636839 CTDSP1Q9GZU7 261 aa15□□□□□ -0.01
CLN3-250ENST00000636839 TMEM242Q9NWH2 141 aa15□□□□□ -0.01
CLN3-250ENST00000636839 SIGLEC8Q9NYZ4 499 aa15□□□□□ -0.01
CLN3-250ENST00000636839 CT45A10P0DMU9 189 aa15□□□□□ -0.01
CLN3-250ENST00000636839 SNRPD3P62318 126 aaKnown RBP15□□□□□ -0.01
CLN3-250ENST00000636839 Q6ZQT7 251 aa15□□□□□ -0.01
CLN3-250ENST00000636839 ZNF256Q9Y2P7 627 aaPredicted RBP15□□□□□ -0.01
CLN3-250ENST00000636839 COLCA2A8K830 154 aa14.99□□□□□ -0.01
CLN3-250ENST00000636839 ZNF138P52744 262 aa14.99□□□□□ -0.01
CLN3-250ENST00000636839 FAM3BP58499 235 aaPredicted RBP14.99□□□□□ -0.01
CLN3-250ENST00000636839 TMEM78Q5T7P6 136 aa14.99□□□□□ -0.01
CLN3-250ENST00000636839 OR10J6PQ8NGY7 276 aa14.99□□□□□ -0.01
CLN3-250ENST00000636839 ZNF492Q9P255 531 aa14.99□□□□□ -0.01
CLN3-250ENST00000636839 AGRNO00468 2067 aa14.99□□□□□ -0.01
CLN3-250ENST00000636839 SMIM12Q96EX1 92 aa14.99□□□□□ -0.01
CLN3-250ENST00000636839 OSTCQ9NRP0 149 aa14.99□□□□□ -0.01
CLN3-250ENST00000636839 STAB1Q9NY15 2570 aa14.98□□□□□ -0.01
CLN3-250ENST00000636839 TGIF2-C20orf24A0A0A6YYL0 155 aa14.98□□□□□ -0.01
CLN3-250ENST00000636839 C19orf71A6NCJ1 209 aa14.98□□□□□ -0.01
CLN3-250ENST00000636839 NPIPB6E9PJ23 425 aa14.98□□□□□ -0.01
CLN3-250ENST00000636839 J3KRW8 73 aa14.98□□□□□ -0.01
CLN3-250ENST00000636839 KIR3DS1Q14943 382 aa14.98□□□□□ -0.01
CLN3-250ENST00000636839 ELOBQ15370 118 aa14.98□□□□□ -0.01
CLN3-250ENST00000636839 NOTCH3Q9UM47 2321 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 ZNF705GA8MUZ8 300 aaPredicted RBP14.97□□□□□ -0.01
CLN3-250ENST00000636839 IGKV3-20P01619 116 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 PFN1P07737 140 aaKnown RBP14.97□□□□□ -0.01
CLN3-250ENST00000636839 CXCL1P09341 107 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 DEFB131AP59861 70 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 SAPCD1Q5SSQ6 148 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 SAMD13Q5VXD3 122 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 C15orf54Q8N8G6 183 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 TUBA4BQ9H853 241 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 RPL19P84098 196 aaKnown RBP14.97□□□□□ -0.01
CLN3-250ENST00000636839 PRR9Q5T870 116 aa14.97□□□□□ -0.01
CLN3-250ENST00000636839 KNCNA6PVL3 124 aa14.96□□□□□ -0.01
CLN3-250ENST00000636839 IGLV1-51P01701 117 aa14.96□□□□□ -0.01
CLN3-250ENST00000636839 TCL1AP56279 114 aa14.96□□□□□ -0.01
CLN3-250ENST00000636839 FAM231DQ6ZW35 169 aa14.96□□□□□ -0.01
CLN3-250ENST00000636839 CXorf65A6NEN9 183 aa14.95□□□□□ -0.02
CLN3-250ENST00000636839 PPP1R2P9O14990 202 aa14.95□□□□□ -0.02
CLN3-250ENST00000636839 APRG1Q8IVJ8 170 aa14.95□□□□□ -0.02
CLN3-250ENST00000636839 SPAG8Q99932 426 aaPredicted RBP14.95□□□□□ -0.02
CLN3-250ENST00000636839 A0A0J9YX75 114 aa14.95□□□□□ -0.02
CLN3-250ENST00000636839 GATCO43716 136 aaKnown RBP14.95□□□□□ -0.02
CLN3-250ENST00000636839 LINC00477Q96M19 166 aa14.95□□□□□ -0.02
CLN3-250ENST00000636839 COL6A5A8TX70 2615 aa14.94□□□□□ -0.02
CLN3-250ENST00000636839 FBLL1A6NHQ2 334 aaKnown RBP14.94□□□□□ -0.02
CLN3-250ENST00000636839 SH2D1AO60880 128 aa14.94□□□□□ -0.02
CLN3-250ENST00000636839 GZMBP10144 247 aa14.94□□□□□ -0.02
CLN3-250ENST00000636839 COX8CQ7Z4L0 72 aa14.94□□□□□ -0.02
CLN3-250ENST00000636839 DAZAP1Q96EP5 407 aaKnown RBP14.94□□□□□ -0.02
CLN3-250ENST00000636839 MAP6D1Q9H9H5 199 aa14.94□□□□□ -0.02
CLN3-250ENST00000636839 P01737 135 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 ZFAND2AQ8N6M9 145 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 OR4B1Q8NGF8 309 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 NDFIP1Q9BT67 221 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 ZNF747Q9BV97 191 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 TRAV2A0A0B4J234 112 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 2307.9 ms