RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	OR11H4	Q8NGC9	324 aa		11.61	□□□□□ -0.55
ERBB2-222	ENST00000584908	RAB24	Q969Q5	203 aa		11.61	□□□□□ -0.55
ERBB2-222	ENST00000584908	TRAV10	A0A0B4J240	114 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	TRBV7-9	A0A0J9YWB2	115 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	ZNF705G	A8MUZ8	300 aa	Predicted RBP	11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	KLLN	B2CW77	178 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	EIF3G	O75821	320 aa	Known RBP eCLIP	11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	FAM222A	Q5U5X8	452 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	KCNRG	Q8N5I3	272 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	LINC01587	Q99440	93 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	YTHDF2	Q9Y5A9	579 aa	Known RBP	11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	PLAC8L1	A1L4L8	177 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	IGKV2D-40	P01614	121 aa	Predicted RBP	11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	PRM2	P04554	102 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	ARL14EPL	P0DKL9	152 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	CSN1S1	P47710	185 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	EMP1	P54849	157 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	TCTA	P57738	103 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	TMEM78	Q5T7P6	136 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908		Q6ZNX1	250 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	RXFP4	Q8TDU9	374 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	C2CD4C	Q8TF44	421 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	VGLL1	Q99990	258 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	OTOR	Q9NRC9	128 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	ZNF492	Q9P255	531 aa		11.6	□□□□□ -0.55
ERBB2-222	ENST00000584908	HMGB3	O15347	200 aa	Known RBP	11.59	□□□□□ -0.55
ERBB2-222	ENST00000584908	AZU1	P20160	251 aa		11.59	□□□□□ -0.55
ERBB2-222	ENST00000584908	ZNF493	Q6ZR52	646 aa		11.59	□□□□□ -0.55
ERBB2-222	ENST00000584908	C16orf74	Q96GX8	76 aa		11.59	□□□□□ -0.55
ERBB2-222	ENST00000584908	ACTR3C	Q9C0K3	210 aa	Predicted RBP	11.59	□□□□□ -0.55
ERBB2-222	ENST00000584908	LYRM9	A8MSI8	78 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	DIRC3	C9JPN6	131 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	FAM74A1	Q5RGS3	127 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	SSX7	Q7RTT5	188 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	ZFAND2A	Q8N6M9	145 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	RNASE8	Q8TDE3	154 aa	Known RBP	11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	TMEM263	Q8WUH6	116 aa	Known RBP	11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	TMED6	Q8WW62	240 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	LINC00476	Q8WZB0	136 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	ST6GAL2	Q96JF0	529 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	ARPC5L	Q9BPX5	153 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908	NIPSNAP3B	Q9BS92	247 aa		11.58	□□□□□ -0.56
ERBB2-222	ENST00000584908		A0A0D9SG52	128 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	C7orf71	A4D174	169 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	PGP	A6NDG6	321 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	ZNF324	O75467	553 aa	Predicted RBP	11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	CXorf1	O96002	111 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	GCHFR	P30047	84 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	ZNF138	P52744	262 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	ZNF726P1	Q15940	193 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	ZNF767P	Q75MW2	155 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	PYGO2	Q9BRQ0	406 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	LINC00467	Q9BRT7	94 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	LENEP	Q9Y5L5	61 aa		11.57	□□□□□ -0.56
ERBB2-222	ENST00000584908	DEFB131B	A0A096LNP1	70 aa		11.56	□□□□□ -0.56
ERBB2-222	ENST00000584908	TRAV12-3	A0A0B4J271	114 aa		11.56	□□□□□ -0.56
ERBB2-222	ENST00000584908	CTXND1	A0A1B0GTU2	59 aa		11.56	□□□□□ -0.56
ERBB2-222	ENST00000584908	TMEM167B	Q9NRX6	74 aa		11.56	□□□□□ -0.56
ERBB2-222	ENST00000584908	APLN	Q9ULZ1	77 aa		11.56	□□□□□ -0.56
ERBB2-222	ENST00000584908		J3KRW8	73 aa		11.55	□□□□□ -0.56
ERBB2-222	ENST00000584908	GPX1	P07203	203 aa		11.55	□□□□□ -0.56
ERBB2-222	ENST00000584908	CD300C	Q08708	224 aa		11.55	□□□□□ -0.56
ERBB2-222	ENST00000584908	TCTE3	Q8IZS6	198 aa		11.55	□□□□□ -0.56
ERBB2-222	ENST00000584908	CMTM2	Q8TAZ6	248 aa		11.55	□□□□□ -0.56
ERBB2-222	ENST00000584908	HYDIN	Q4G0P3	5121 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	IGLL5	B9A064	214 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	BCL2L11	O43521	198 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	HTN1	P15515	57 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	DAD1	P61803	113 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	BTN1A1	Q13410	526 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	AKR1C8P	Q5T2L2	129 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	PRR9	Q5T870	116 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	LGALS9C	Q6DKI2	356 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908		Q8TAT8	98 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	HYLS1	Q96M11	299 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	PLA2G2E	Q9NZK7	142 aa		11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	11.54	□□□□□ -0.56
ERBB2-222	ENST00000584908	IGHV4-4	A0A075B6R2	117 aa		11.53	□□□□□ -0.56
ERBB2-222	ENST00000584908	SEC11B	P0C7V7	166 aa		11.53	□□□□□ -0.56
ERBB2-222	ENST00000584908	CCDC28A	Q8IWP9	274 aa		11.53	□□□□□ -0.56
ERBB2-222	ENST00000584908	C5orf17	Q8NAS9	161 aa		11.53	□□□□□ -0.56
ERBB2-222	ENST00000584908	FAM210B	Q96KR6	192 aa		11.53	□□□□□ -0.56
ERBB2-222	ENST00000584908	SERTM2	A0A1B0GWG4	89 aa		11.52	□□□□□ -0.57
ERBB2-222	ENST00000584908	KANTR	A0A1W2PQU2	76 aa		11.52	□□□□□ -0.57
ERBB2-222	ENST00000584908		A0A1W2PRE2	83 aa		11.52	□□□□□ -0.57
ERBB2-222	ENST00000584908	RNASE4	P34096	147 aa	Known RBP	11.52	□□□□□ -0.57
ERBB2-222	ENST00000584908	ANXA2R	Q3ZCQ2	193 aa		11.52	□□□□□ -0.57
ERBB2-222	ENST00000584908	LINC00612	Q8N6U2	182 aa		11.52	□□□□□ -0.57
ERBB2-222	ENST00000584908	VPS13D	Q5THJ4	4388 aa		11.52	□□□□□ -0.57
ERBB2-222	ENST00000584908	GGTLC3	B5MD39	225 aa		11.51	□□□□□ -0.57
ERBB2-222	ENST00000584908		Q6AWC8	147 aa		11.51	□□□□□ -0.57
ERBB2-222	ENST00000584908	GOLT1A	Q6ZVE7	132 aa		11.51	□□□□□ -0.57
ERBB2-222	ENST00000584908	TMUB2	Q71RG4	321 aa		11.51	□□□□□ -0.57
ERBB2-222	ENST00000584908	EIF4E3	Q8N5X7	224 aa	Known RBP	11.51	□□□□□ -0.57
ERBB2-222	ENST00000584908	UMAD1	C9J7I0	102 aa		11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	LY6G6C	O95867	125 aa		11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	TCRA	P04437	139 aa		11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	GNG5	P63218	68 aa		11.5	□□□□□ -0.57
ERBB2-222	ENST00000584908	EIF5A	P63241	154 aa	Known RBP	11.5	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 58 ms