RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 DEDD2Q8WXF8 326 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 FRZBQ92765 325 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 TMEM203Q969S6 136 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 ZNF414Q96IQ9 312 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 CAMK2N2Q96S95 79 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 AMELYQ99218 206 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 WDR61Q9GZS3 305 aaKnown RBP3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 LPAR5Q9H1C0 372 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 TP73-AS1Q9UF72 201 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 CACFD1Q9UGQ2 172 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 LINC00312Q9Y6C7 94 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 ABCA4P78363 2273 aa3.64□□□□□ -1.83
VPS35P1-201ENST00000563400 BOD1L1Q8NFC6 3051 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 LRRK2Q5S007 2527 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 C9JAW5 83 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 IFNA10P01566 189 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 IFNA7P01567 189 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 SMIM6P0DI80 62 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 OPRK1P41145 380 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 LPAR6P43657 344 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 SLC38A11Q08AI6 406 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 Q6Q795 121 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 LINC00299Q6ZSB3 139 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 CAMK2N1Q7Z7J9 78 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 TMEM229BQ8NBD8 167 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 CLDND2Q8NHS1 167 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 MRPL30Q8TCC3 161 aaKnown RBP3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 ZC2HC1AQ96GY0 325 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 C14orf144Q96I85 54 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 LYZL4Q96KX0 146 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 ZNF714Q96N38 554 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 SCRT2Q9NQ03 307 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 TXNL4BQ9NX01 149 aaKnown RBP3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 SPANXCQ9NY87 97 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 TAS2R4Q9NYW5 299 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 HIGD1AQ9Y241 93 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 CACNA1DQ01668 2161 aa3.63□□□□□ -1.83
VPS35P1-201ENST00000563400 NBEAQ8NFP9 2946 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 TRBV20OR9-2A0A075B6H5 130 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 LEUTXA8MZ59 168 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 FAM25AB3EWG3 89 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 FAM25CB3EWG5 89 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 FAM25GB3EWG6 89 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 H0YJW9 148 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 RGS5O15539 181 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 CREBL2O60519 120 aaPredicted RBP3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 LY6G6DO95868 133 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 GYPAP02724 150 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 GIG44P09565 113 aaPredicted RBP3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 ZNF728P0DKX0 622 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 RBM11P57052 281 aaKnown RBP3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 GNG2P59768 71 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 SSBP1Q04837 148 aaKnown RBP3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 ATP5G2Q06055 141 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 MINOS1Q5TGZ0 78 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 RASL11AQ6T310 242 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 Q6ZR03 302 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 ORMDL3Q8N138 153 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 SUMF2Q8NBJ7 301 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 LINC01006Q8NI28 216 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 RTN4IP1Q8WWV3 396 aaPredicted RBP3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 TCEAL7Q9BRU2 100 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 NDFIP1Q9BT67 221 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 ATG5Q9H1Y0 275 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 MINOS1-NBL1R4GNA1 71 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 UBR5O95071 2799 aaPredicted RBP3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 CREBBPQ92793 2442 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 ARID1AO14497 2285 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 DSCAML1Q8TD84 2053 aa3.62□□□□□ -1.83
VPS35P1-201ENST00000563400 UNC79Q9P2D8 2635 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 A0A1W2PPR1 153 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 A6NIN4 97 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 J3QRK9 145 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 SOCS1O15524 211 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 OR2H2O95918 312 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 HLA-DQB1P01920 261 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 P0C879 139 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 S100A11P31949 105 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 TAS2R30P59541 319 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 LUZP6Q538Z0 58 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 RNASE13Q5GAN3 156 aaKnown RBP3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 PRSS54Q6PEW0 395 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 HEPN1Q6WQI6 88 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 WFDC11Q8NEX6 87 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 GINS4Q9BRT9 223 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 ZNF286AQ9HBT8 521 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 ERG28Q9UKR5 140 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 LAMTOR2Q9Y2Q5 125 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 LSM2Q9Y333 95 aaKnown RBP3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 USP9YO00507 2555 aaPredicted RBP3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 CADP27708 2225 aa3.61□□□□□ -1.83
VPS35P1-201ENST00000563400 TRAV41A0A0B4J266 112 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 IGHV3-66A0A0C4DH42 116 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 A0A1B0GVX0 72 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 ODAMA1E959 279 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 PLA2G10O15496 165 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 PGLYRP1O75594 196 aaPredicted RBP3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 INSP01308 110 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 TLX1NBP0CAT3 122 aa3.6□□□□□ -1.83
VPS35P1-201ENST00000563400 CFC1P0CG37 223 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms