RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CRYBG3Q68DQ2 2970 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 HRNRQ86YZ3 2850 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-203ENST00000547825 TRAV8-2A0A0B4J237 113 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 IGHV1-24A0A0C4DH33 117 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 IGHV2-70DA0A0C4DH43 119 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 TMEM213A2RRL7 107 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 LYNX1G3V0Z9 82 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 PRYO14603 147 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 LYNX1P0DP58 116 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 PRTN3P24158 256 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 BMI1P35226 326 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 PRCDQ00LT1 54 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 HSD52Q0P140 79 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 DUX4L9Q6RFH8 374 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-203ENST00000547825 LYZL1Q6UWQ5 148 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 Q6ZSN1 163 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 Q6ZSR3 168 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 Q6ZT83 130 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 CACNG8Q8WXS5 425 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 ABCA2Q9BZC7 2435 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 IGKV2-40A0A087WW87 121 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-203ENST00000547825 TCRBV4S1A1TA0A5B7 111 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 IQCF6A8MYZ5 107 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 K7EM74 188 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 IGKV2D-40P01614 121 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-203ENST00000547825 AZU1P20160 251 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 TMEM78Q5T7P6 136 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 LYRM7Q5U5X0 104 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 GFRALQ6UXV0 394 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 WDR31Q8NA23 367 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 CHCHD1Q96BP2 118 aaKnown RBP4.39□□□□□ -1.71
LIMA1-203ENST00000547825 CCDC168Q8NDH2 2452 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 IGHV3-64A0A075B6Q5 118 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 MC5RP33032 325 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 B3GALT5-AS1P59052 145 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 HERVK_113P61574 105 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 BEAN1Q3B7T3 259 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 Q6ZS49 121 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 OSR1Q8TAX0 266 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-203ENST00000547825 ANAPC13Q9BS18 74 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 RNF114Q9Y508 228 aa4.39□□□□□ -1.71
LIMA1-203ENST00000547825 H3BMG7 143 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 MORN5Q5VZ52 161 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 FAM71F2Q6NXP2 309 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 SH2D6Q7Z4S9 175 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 C9orf106Q8NAJ2 232 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 FDCSPQ8NFU4 85 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 OR4X2Q8NGF9 303 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 OR5A1Q8NGJ0 315 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 FMC1Q96HJ9 113 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 SCGB3A1Q96QR1 104 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 MS4A6AQ9H2W1 248 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 PHLDA3Q9Y5J5 127 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-203ENST00000547825 NDUFB8O95169 186 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 DLX6P56179 175 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 SRSF7Q16629 238 aaKnown RBP eCLIP4.38□□□□□ -1.71
LIMA1-203ENST00000547825 MRPL52Q86TS9 123 aaKnown RBP4.38□□□□□ -1.71
LIMA1-203ENST00000547825 PCP2Q8IVA1 136 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 FAM110DQ8TAY7 271 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-203ENST00000547825 WWC2-AS2Q96NR7 200 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 IGKV1D-17A0A075B6S4 117 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 TEX48A0A1B0GUV7 120 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 LGALS7P47929 136 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 COLCA1Q6ZS62 124 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 NEUROG1Q92886 237 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 CSTL1Q9H114 145 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 UBTD1Q9HAC8 227 aa4.38□□□□□ -1.71
LIMA1-203ENST00000547825 SNCGO76070 127 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 VDAC2P45880 294 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-203ENST00000547825 ZNF329Q86UD4 541 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 IGF2RP11717 2491 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 TRBV6-6A0A0A6YYG2 114 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 TRAV40A0A0B4J280 105 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 A0A0U1RRA0 63 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 C16orf97H3BN30 126 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 MMP23AO75900 390 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 DPM2O94777 84 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 IGHV4-39P01824 125 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 SPINK8P0C7L1 97 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 RNASE2P10153 161 aaKnown RBP4.37□□□□□ -1.71
LIMA1-203ENST00000547825 PLA2G2AP14555 144 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 RBX1P62877 108 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 SSBP2P81877 361 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-203ENST00000547825 KRTAP27-1Q3LI81 207 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 FOXL2NBQ6ZUU3 175 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 ARPC1AQ92747 370 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 C1RLQ9NZP8 487 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 SPRR3Q9UBC9 169 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 IGKCP01834 107 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 MFAP4P55083 255 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 Q6ZR03 302 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 ATP5L2Q7Z4Y8 100 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 DKK2Q9UBU2 259 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 TP53TG3Q9ULZ0 132 aa4.37□□□□□ -1.71
LIMA1-203ENST00000547825 SRRM4A7MD48 611 aaKnown RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 TAX1BP3O14907 124 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 CRXO43186 299 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 GLRXP35754 106 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms