RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 RMND5BQ96G75 393 aaPredicted RBP0.17□□□□□ -2.38
VPS13A-213ENST00000539950 OR4C12Q96R67 309 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 EFCAB11Q9BUY7 163 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 CCDC32Q9BV29 185 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 C19orf12Q9NSK7 152 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 SCN3AQ9NY46 2000 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 MPC1Q9Y5U8 109 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 V9GYQ6 96 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 MYH10P35580 1976 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 PBRM1Q86U86 1689 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 CTTNBP2Q8WZ74 1663 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 KCPQ6ZWJ8 1503 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 DLC1Q96QB1 1528 aa0.17□□□□□ -2.38
VPS13A-213ENST00000539950 SYNE2Q8WXH0 6885 aaKnown RBP0.17□□□□□ -2.38
VPS13A-213ENST00000539950 A2MP01023 1474 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 MGAMO43451 1857 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 EML5Q05BV3 1969 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 PTPRGP23470 1445 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 IGF2P01344 180 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 RPS3P23396 243 aaKnown RBP eCLIP0.16□□□□□ -2.38
VPS13A-213ENST00000539950 SDC2P34741 201 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 RPL22P35268 128 aaKnown RBP0.16□□□□□ -2.38
VPS13A-213ENST00000539950 MAXP61244 160 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 B2MP61769 119 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 DIAPH2-AS1Q14236 149 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 SPINK9Q5DT21 86 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 PRELID3AQ96N28 172 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 NABP2Q9BQ15 211 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 LXNQ9BS40 222 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 MED11Q9P086 117 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 TPRKBQ9Y3C4 175 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 MYH2Q9UKX2 1941 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 N4BP2Q86UW6 1770 aaPredicted RBP0.16□□□□□ -2.38
VPS13A-213ENST00000539950 MED23Q9ULK4 1368 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 ANKRD31Q8N7Z5 1873 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 TET1Q8NFU7 2136 aa0.16□□□□□ -2.38
VPS13A-213ENST00000539950 MYO18AQ92614 2054 aaKnown RBP0.15□□□□□ -2.38
VPS13A-213ENST00000539950 TRAV13-1A0A0B4J241 112 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 LOC107984640A0A0U1RRK4 108 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 A0A1B0GX51 115 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 IFITM5A6NNB3 132 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 H3BMG7 143 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 IFNA21P01568 189 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 PRH1P02810 166 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 MT-ND6P03923 174 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 GYPBP06028 91 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 CD14P08571 375 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 FABP2P12104 132 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 TPT1P13693 172 aaKnown RBP0.15□□□□□ -2.39
VPS13A-213ENST00000539950 RPL7P18124 248 aaKnown RBP0.15□□□□□ -2.39
VPS13A-213ENST00000539950 NDUFA6P56556 154 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 FXYD4P59646 89 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 DNAJB13P59910 316 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 VMA21Q3ZAQ7 101 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 OCIAD2Q56VL3 154 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 TMEM128Q5BJH2 165 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 Q5XG85 94 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 HRCT1Q6UXD1 115 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 CASC2Q6XLA1 102 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 LINC00305Q7Z4B0 112 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 OR5A2Q8NGI9 324 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 OR5H6Q8NGV6 325 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 OR5AK2Q8NH90 309 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 GRPEL2Q8TAA5 225 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 DYDC1Q8WWB3 177 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 CLEC2BQ92478 149 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 CCDC115Q96NT0 180 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 CIB3Q96Q77 187 aaPredicted RBP0.15□□□□□ -2.39
VPS13A-213ENST00000539950 LPAR5Q9H1C0 372 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 WFDC10AQ9H1F0 79 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 NIT2Q9NQR4 276 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 CBLN4Q9NTU7 201 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 MRPL35Q9NZE8 188 aaKnown RBP0.15□□□□□ -2.39
VPS13A-213ENST00000539950 KIAA1549LQ6ZVL6 1849 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 MYH3P11055 1940 aa0.15□□□□□ -2.39
VPS13A-213ENST00000539950 APCP25054 2843 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 UNC13CQ8NB66 2214 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 FGD6Q6ZV73 1430 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 MYO5AQ9Y4I1 1855 aaKnown RBP0.14□□□□□ -2.39
VPS13A-213ENST00000539950 CASP8AP2Q9UKL3 1982 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 MUC4Q99102 2169 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 A0A096LPI6 279 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 TRBV30A0A0K0K1B3 111 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 NBDYA0A0U1RRE5 68 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 LOC107986453A0A1B0GWG9 222 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 NUPR2A6NF83 97 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 ZNF727A8MUV8 499 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 UQCRQO14949 82 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 SCTP09683 121 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 KRTAP2-3P0C7H8 128 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 RPL37AP61513 92 aaKnown RBP0.14□□□□□ -2.39
VPS13A-213ENST00000539950 XAF1Q6GPH4 301 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 Q6ZQY7 126 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 Q6ZS92 163 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 CROCCP2Q86T23 111 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 TCTEX1D1Q8N7M0 179 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 TMEM229BQ8NBD8 167 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 OR51A4Q8NGJ6 313 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 CCL19Q99731 98 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 LIMD2Q9BT23 127 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms