RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 RSG1Q9BU20 258 aa6.28□□□□□ -1.4
USP28-205ENST00000537706 FAM74A7A6NL05 159 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 PPT1P50897 306 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 B2MP61769 119 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 FAM74A3Q4VXF1 159 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 SPATA31B1PQ5VZV4 182 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 OR10P1Q8NGE3 313 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 OR1P1Q8NH06 330 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 EIF5A2Q9GZV4 153 aaKnown RBP6.27□□□□□ -1.41
USP28-205ENST00000537706 CRYBB3P26998 211 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 PSG9Q00887 426 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 OR4B1Q8NGF8 309 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 CLUHP3Q96NS8 147 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 SLC35B3Q9H1N7 401 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 ZFAND3Q9H8U3 227 aa6.27□□□□□ -1.41
USP28-205ENST00000537706 TEX50A0A1B0GTY4 177 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 A0A1B0GV50 99 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 RBFOX3A6NFN3 312 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 MT-CO2P00403 227 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 FGF7P21781 194 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 SPINK9Q5DT21 86 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 ZNF506Q5JVG8 444 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 C1orf158Q8N1D5 194 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 CLRN3Q8NCR9 226 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 SFT2D1Q8WV19 159 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 MBD3L1Q8WWY6 194 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 GGACTQ9BVM4 153 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 NPCDR1Q9BY65 106 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 RPRMQ9NS64 109 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 PRNDQ9UKY0 176 aa6.26□□□□□ -1.41
USP28-205ENST00000537706 TRAV26-1A0A087WT03 109 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 GAS8-AS1O95177 125 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 MBP02144 154 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 ID1P41134 155 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 CCL20P78556 96 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 EBLN2Q6P2I7 272 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 FOXI2Q6ZQN5 318 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 NRN1Q9NPD7 142 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 NDUFA4L2Q9NRX3 87 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 MAP1LC3B2A6NCE7 125 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 PRSS46E5RG02 174 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 C17orf112F2Z3M2 114 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 I3L2K1 104 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 PSCAO43653 123 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 MPDU1O75352 247 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 HSPE1P61604 102 aaKnown RBP6.25□□□□□ -1.41
USP28-205ENST00000537706 ZNF726P1Q15940 193 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 KHDC3LQ587J8 217 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 OR10G4Q8NGN3 311 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 MAP1LC3BQ9GZQ8 125 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 HEYLQ9NQ87 328 aaPredicted RBP6.25□□□□□ -1.41
USP28-205ENST00000537706 FKBP11Q9NYL4 201 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 FAM30AQ9NZY2 134 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 WDR83OSQ9Y284 106 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 OR51B2Q9Y5P1 312 aa6.25□□□□□ -1.41
USP28-205ENST00000537706 A0A0J9YY99 117 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 H3BNG1 76 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 BCL2P10415 239 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 TSPOP30536 169 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 RAB11AP62491 216 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 CBLN2Q8IUK8 224 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 SLC24A4Q8NFF2 622 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 GLMPQ8WWB7 406 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 SAV1Q9H4B6 383 aaPredicted RBP6.24□□□□□ -1.41
USP28-205ENST00000537706 ENY2Q9NPA8 101 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 KCNIP2Q9NS61 270 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 MSRB1Q9NZV6 116 aa6.24□□□□□ -1.41
USP28-205ENST00000537706 CTXND1A0A1B0GTU2 59 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 LOC105371267A0A1B0GV96 52 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 ZNF705GA8MUZ8 300 aaPredicted RBP6.23□□□□□ -1.41
USP28-205ENST00000537706 IFNA1P01562 189 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 SRP19P09132 144 aaKnown RBP6.23□□□□□ -1.41
USP28-205ENST00000537706 ATP5IP56385 69 aaPredicted RBP6.23□□□□□ -1.41
USP28-205ENST00000537706 PRCDQ00LT1 54 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 RHEBQ15382 184 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 ZNF709Q8N972 641 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 IGF2BP2-AS1Q96M15 143 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 A0A0U1RQV1 116 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 FNDC10F2Z333 226 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 K7EP13 123 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 FFAR4Q5NUL3 377 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 C16orf54Q6UWD8 224 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 LCN15Q6UWW0 184 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 TMEM170AQ8WVE7 144 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 SMCO4Q9NRQ5 59 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 GNG13Q9P2W3 67 aa6.23□□□□□ -1.41
USP28-205ENST00000537706 NDUFS6O75380 124 aaKnown RBP6.22□□□□□ -1.41
USP28-205ENST00000537706 NXPH4O95158 308 aa6.22□□□□□ -1.41
USP28-205ENST00000537706 INSP01308 110 aa6.22□□□□□ -1.41
USP28-205ENST00000537706 IGHV3-48P01763 117 aa6.22□□□□□ -1.41
USP28-205ENST00000537706 TAGLN2P37802 199 aaKnown RBP6.22□□□□□ -1.41
USP28-205ENST00000537706 ACOT6Q3I5F7 207 aaPredicted RBP6.22□□□□□ -1.41
USP28-205ENST00000537706 CYB561D1Q8N8Q1 229 aa6.22□□□□□ -1.41
USP28-205ENST00000537706 OR10G9Q8NGN4 311 aa6.22□□□□□ -1.41
USP28-205ENST00000537706 OR10G7Q8NGN6 311 aa6.22□□□□□ -1.41
USP28-205ENST00000537706 ACTR3CQ9C0K3 210 aaPredicted RBP6.22□□□□□ -1.41
USP28-205ENST00000537706 SLC25A22Q9H936 323 aa6.22□□□□□ -1.41
USP28-205ENST00000537706 TIMM8BQ9Y5J9 83 aaPredicted RBP6.22□□□□□ -1.41
USP28-205ENST00000537706 TNFRSF18Q9Y5U5 241 aa6.22□□□□□ -1.41
USP28-205ENST00000537706 SMCO3A2RU48 225 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms