RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 PRR27Q6MZM9 219 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 RNASEKQ6P5S7 137 aaKnown RBP6.76□□□□□ -1.33
HDAC3-215ENST00000519474 PATE2Q6UY27 113 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 NIT1Q86X76 327 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 OR10P1Q8NGE3 313 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 MRAP2Q96G30 205 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 C20orf173Q96LM9 149 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 SEC11CQ9BY50 192 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 C11orf68Q9H3H3 251 aaKnown RBP6.76□□□□□ -1.33
HDAC3-215ENST00000519474 XCL2Q9UBD3 114 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 RCL1Q9Y2P8 373 aaKnown RBP6.76□□□□□ -1.33
HDAC3-215ENST00000519474 DNAH7Q8WXX0 4024 aa6.76□□□□□ -1.33
HDAC3-215ENST00000519474 CSMD3Q7Z407 3707 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 STARD9Q9P2P6 4700 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 IGHV4-28A0A0C4DH34 117 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 FNDC10F2Z333 226 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 DEDDO75618 318 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 IGKV3-20P01619 116 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 IL5P05113 134 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 HLA-DRB4P13762 266 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 PSMB3P49720 205 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 AKR1C1Q04828 323 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 OR5I1Q13606 314 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 OR1B1Q8NGR6 318 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 C2orf50Q96LR7 162 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 C20orf144Q9BQM9 153 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 MARVELD1Q9BSK0 173 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 SLC25A39Q9BZJ4 359 aaPredicted RBP6.75□□□□□ -1.33
HDAC3-215ENST00000519474 SLC25A22Q9H936 323 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 KLK5Q9Y337 293 aaPredicted RBP6.75□□□□□ -1.33
HDAC3-215ENST00000519474 HLA-DRB4X5D2U9 266 aa6.75□□□□□ -1.33
HDAC3-215ENST00000519474 FAM24AA6NFZ4 105 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 F6UB75 175 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 K7EPK0 472 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 ISLRO14498 428 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 LINC00869P0C866 280 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 MIFP14174 115 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 GALR1P47211 349 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 PPT1P50897 306 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 FXYD7P58549 80 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 BAXQ07812 192 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 LGALSLQ3ZCW2 172 aaPredicted RBP6.74□□□□□ -1.33
HDAC3-215ENST00000519474 IGFL4Q6B9Z1 124 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 FOXI2Q6ZQN5 318 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 TMUB2Q71RG4 321 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 ZNF664Q8N3J9 261 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 SHANK2-AS3Q9BTD1 123 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 TMEM147Q9BVK8 224 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 PRO1933Q9H354 126 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 DOK5Q9P104 306 aa6.74□□□□□ -1.33
HDAC3-215ENST00000519474 TRAV8-2A0A0B4J237 113 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 A0A0J9YX75 114 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 H3BRN7 92 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 ZNF561-AS1K7EIQ3 104 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 HYPMO75409 117 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 LY6G6CO95867 125 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 PSG9Q00887 426 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 OPCMLQ14982 345 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 FAM78BQ5VT40 261 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 TEPPQ6URK8 271 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 C1orf158Q8N1D5 194 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 ZNF709Q8N972 641 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 ZNF738Q8NE65 137 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 OR4B1Q8NGF8 309 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 LINC00476Q8WZB0 136 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 HIST1H2BAQ96A08 127 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 C16orf92Q96LL3 132 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 GPR82Q96P67 336 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 SCRT1Q9BWW7 348 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 C1QTNF4Q9BXJ3 329 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 MAP1LC3CQ9BXW4 147 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 SLC35B3Q9H1N7 401 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 HIGD1AQ9Y241 93 aa6.73□□□□□ -1.33
HDAC3-215ENST00000519474 LSM5Q9Y4Y9 91 aaKnown RBP6.73□□□□□ -1.33
HDAC3-215ENST00000519474 SACSQ9NZJ4 4579 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 DYNC2H1Q8NCM8 4307 aaKnown RBP6.72□□□□□ -1.33
HDAC3-215ENST00000519474 A8MTW9 85 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 ZNF705FA8MVS1 300 aaPredicted RBP6.72□□□□□ -1.33
HDAC3-215ENST00000519474 PHOX2AO14813 284 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 AGPAT2O15120 278 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 MRPS12O15235 138 aaKnown RBP6.72□□□□□ -1.33
HDAC3-215ENST00000519474 OR5G3P0C626 314 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 ZNF705DP0CH99 300 aaPredicted RBP6.72□□□□□ -1.33
HDAC3-215ENST00000519474 ZNF705BP0CI00 300 aaPredicted RBP6.72□□□□□ -1.33
HDAC3-215ENST00000519474 SMIM17P0DL12 118 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 HLA-DMBP28068 263 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 GAGE5Q13069 117 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 GAGE6Q13070 117 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 C12orf74Q32Q52 190 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 PDZD11Q5EBL8 140 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 SPATA31B1PQ5VZV4 182 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 AMTNQ6UX39 209 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 ZNF705AQ6ZN79 300 aaPredicted RBP6.72□□□□□ -1.33
HDAC3-215ENST00000519474 OR10D4PQ8NGN7 298 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 UHRF2Q96PU4 802 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 SIGMAR1Q99720 223 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 ARL6Q9H0F7 186 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 RPRMQ9NS64 109 aa6.72□□□□□ -1.33
HDAC3-215ENST00000519474 RS1O15537 224 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms