RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 FNDC10F2Z333 226 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 M0R2Z0 102 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 SDCBPO00560 298 aaPredicted RBP2.36□□□□□ -2.03
VPS13D-207ENST00000476169 RER1O15258 196 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 HIST1H2BKO60814 126 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 IGLV6-57P01721 117 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 HIST1H2BJP06899 126 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 ZNF705BP0CI00 300 aaPredicted RBP2.36□□□□□ -2.03
VPS13D-207ENST00000476169 HIST1H1AQ02539 215 aaPredicted RBP2.36□□□□□ -2.03
VPS13D-207ENST00000476169 ZNF90Q03938 601 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 LRRC18Q8N456 261 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 LINC00471Q8N535 108 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 OR51A4Q8NGJ6 313 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 OR5D16Q8NGK9 328 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 BRK1Q8WUW1 75 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 TPT1P8Q9HAU6 139 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 NHP2Q9NX24 153 aaKnown RBP2.36□□□□□ -2.03
VPS13D-207ENST00000476169 MKI67P46013 3256 aaKnown RBP2.36□□□□□ -2.03
VPS13D-207ENST00000476169 PRR14LQ5THK1 2151 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 PTPRFP10586 1907 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 LAMA3Q16787 3333 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 TRAV13-1A0A0B4J241 112 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 TRAV3A0A0B4J244 114 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 LOC107984640A0A0U1RRK4 108 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 A0A1B0GW64 132 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 PVALEFA0A1B0GWK0 134 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 C5orf58C9J3I9 102 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 H3BMG7 143 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 TIMM17BO60830 172 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 MT-ND4LP03901 98 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 MPC1LP0DKB6 136 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 HMGA1P17096 107 aaKnown RBP2.35□□□□□ -2.03
VPS13D-207ENST00000476169 PRR9Q5T870 116 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 RPL13AP3Q6NVV1 102 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 BCL2L10Q9HD36 194 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 MARCOQ9UEW3 520 aaPredicted RBP2.35□□□□□ -2.03
VPS13D-207ENST00000476169 U3KQ87 197 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 DOCK4Q8N1I0 1966 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 PLXNB1O43157 2135 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 CDK5RAP2Q96SN8 1893 aa2.35□□□□□ -2.03
VPS13D-207ENST00000476169 MYH1P12882 1939 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 RANBP2P49792 3224 aaKnown RBP2.34□□□□□ -2.03
VPS13D-207ENST00000476169 ODF3BA8MYP8 253 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 J3QQQ9 107 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 J3QR89 54 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 SULT1C4O75897 302 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 PMP2P02689 132 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 SCTP09683 121 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 MGST1P10620 155 aaKnown RBP2.34□□□□□ -2.03
VPS13D-207ENST00000476169 COX6A1P12074 109 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 TMEM244Q5VVB8 128 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 OR5H6Q8NGV6 325 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 CBLN4Q9NTU7 201 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 CCL26Q9Y258 94 aa2.34□□□□□ -2.03
VPS13D-207ENST00000476169 NYNRINQ9P2P1 1898 aaKnown RBP2.34□□□□□ -2.03
VPS13D-207ENST00000476169 LTBP2Q14767 1821 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 LAMA4Q16363 1823 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 TMSB15BA0A087X1C1 80 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 IGKV2-24A0A0C4DH68 120 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 CCDC160A6NGH7 325 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 SHBGP04278 402 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 CSRP1P21291 193 aaKnown RBP2.33□□□□□ -2.04
VPS13D-207ENST00000476169 AQP4P55087 323 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 RPL26P61254 145 aaKnown RBP2.33□□□□□ -2.04
VPS13D-207ENST00000476169 MORN2Q502X0 79 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 Q6ZQT0 140 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 PHF5AQ7RTV0 110 aaKnown RBP2.33□□□□□ -2.04
VPS13D-207ENST00000476169 C3orf56Q8N813 242 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 OR8B3Q8NGG8 313 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 DEDD2Q8WXF8 326 aa2.33□□□□□ -2.04
VPS13D-207ENST00000476169 RPL26L1Q9UNX3 145 aaKnown RBP2.33□□□□□ -2.04
VPS13D-207ENST00000476169 RBBP6Q7Z6E9 1792 aaKnown RBP2.33□□□□□ -2.04
VPS13D-207ENST00000476169 PTPRSQ13332 1948 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 OR51F1A6NGY5 319 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 A8MWV9 139 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 C1QCP02747 245 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 EVI2AP22794 236 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 PEBP1P30086 187 aaKnown RBP2.32□□□□□ -2.04
VPS13D-207ENST00000476169 KLRD1Q13241 179 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 NNATQ16517 81 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 ZNF791Q3KP31 576 aaPredicted RBP2.32□□□□□ -2.04
VPS13D-207ENST00000476169 KRTAP13-2Q52LG2 175 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 CHCHD1Q96BP2 118 aaKnown RBP2.32□□□□□ -2.04
VPS13D-207ENST00000476169 PRELID3AQ96N28 172 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 TAS2R4Q9NYW5 299 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 PSORS1C2Q9UIG4 136 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 PARP14Q460N5 1801 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 PLXNA1Q9UIW2 1896 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 ALPK3Q96L96 1907 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 TRPM6Q9BX84 2022 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 CACNA1DQ01668 2161 aa2.32□□□□□ -2.04
VPS13D-207ENST00000476169 KIF26AQ9ULI4 1882 aaPredicted RBP2.31□□□□□ -2.04
VPS13D-207ENST00000476169 GREB1Q4ZG55 1949 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 IGKV1D-42A0A075B6H8 117 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 IGLV10-54A0A075B6I4 117 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 MUC21A0A0G2JKD1 596 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 TRBV7-6A0A0J9YX20 115 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 MUC21A0A140T8X8 626 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 E7EQL1 145 aa2.31□□□□□ -2.04
VPS13D-207ENST00000476169 K7ERU9 68 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms