RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 APRG1Q8IVJ8 170 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 C5orf17Q8NAS9 161 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 C2CD4CQ8TF44 421 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 HIST1H2BAQ96A08 127 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 C11orf52Q96A22 123 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 LINC00477Q96M19 166 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 SLC35B3Q9H1N7 401 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 AAMDCQ9H7C9 122 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 MAP6D1Q9H9H5 199 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 TRRAPQ9Y4A5 3859 aa4.4□□□□□ -1.71
USP39-213ENST00000467885 IGKV2-40A0A087WW87 121 aaPredicted RBP4.39□□□□□ -1.71
USP39-213ENST00000467885 A0A0J9YX75 114 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 TRBV6-1A0A0K0K1D8 114 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 RBAKDNA6NC62 111 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 KNCNA6PVL3 124 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 F6UZH7 168 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 TMEM250H0YL14 139 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 IFNA1P01562 189 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 IGKV2D-40P01614 121 aaPredicted RBP4.39□□□□□ -1.71
USP39-213ENST00000467885 IGLV2-8P01709 118 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 CSN1S1P47710 185 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 CRIP1P50238 77 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 SNRPD3P62318 126 aaKnown RBP4.39□□□□□ -1.71
USP39-213ENST00000467885 TMEM183BQ1AE95 376 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 PSMG4Q5JS54 123 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 C10orf91Q5T1B1 145 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 KPRPQ5T749 579 aaPredicted RBP4.39□□□□□ -1.71
USP39-213ENST00000467885 SAMD13Q5VXD3 122 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 UQCC3Q6UW78 93 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 AMTNQ6UX39 209 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 LINC00322Q6ZN03 302 aaPredicted RBP4.39□□□□□ -1.71
USP39-213ENST00000467885 GOLT1AQ6ZVE7 132 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 COMMD7Q86VX2 200 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 OR8A1Q8NGG7 326 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 OCC1Q8TAD7 63 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 CMTM2Q8TAZ6 248 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 FAM19A4Q96LR4 140 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 SGK494Q96LW2 274 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 TCEAL7Q9BRU2 100 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 DERL1Q9BUN8 251 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 MLST8Q9BVC4 326 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 SAV1Q9H4B6 383 aaPredicted RBP4.39□□□□□ -1.71
USP39-213ENST00000467885 ZNF492Q9P255 531 aa4.39□□□□□ -1.71
USP39-213ENST00000467885 NOTCH3Q9UM47 2321 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 TRBV20OR9-2A0A075B6H5 130 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 TRAV8-1A0A0A6YYK1 113 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 OR11H12B2RN74 326 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 NPIPB6E9PJ23 425 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 PEX7O00628 323 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 S100A9P06702 114 aaKnown RBP4.38□□□□□ -1.71
USP39-213ENST00000467885 GIG44P09565 113 aaPredicted RBP4.38□□□□□ -1.71
USP39-213ENST00000467885 RPL35P42766 123 aaKnown RBP4.38□□□□□ -1.71
USP39-213ENST00000467885 CNN1P51911 297 aaKnown RBP4.38□□□□□ -1.71
USP39-213ENST00000467885 TAS2R60P59551 318 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 NDUFA5Q16718 116 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 CDPF1Q6NVV7 123 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 FOXI2Q6ZQN5 318 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 COX8CQ7Z4L0 72 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 DEFB125Q8N687 156 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 CYB561D1Q8N8Q1 229 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 ZNF738Q8NE65 137 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 PRR25Q96S07 402 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 ASCL2Q99929 193 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 ATG101Q9BSB4 218 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 GPR61Q9BZJ8 451 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 TREM1Q9NP99 234 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 PSG8Q9UQ74 426 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.38□□□□□ -1.71
USP39-213ENST00000467885 SORL1Q92673 2214 aa4.38□□□□□ -1.71
USP39-213ENST00000467885 SERTM2A0A1B0GWG4 89 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 RBMY1BA6NDE4 496 aaKnown RBP4.37□□□□□ -1.71
USP39-213ENST00000467885 RBMY1EA6NEQ0 496 aaKnown RBP4.37□□□□□ -1.71
USP39-213ENST00000467885 ZNF324O75467 553 aaPredicted RBP4.37□□□□□ -1.71
USP39-213ENST00000467885 DUSP14O95147 198 aaKnown RBP4.37□□□□□ -1.71
USP39-213ENST00000467885 LTAP01374 205 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 RBMY1DP0C7P1 496 aaKnown RBP4.37□□□□□ -1.71
USP39-213ENST00000467885 HLA-DRB4P13762 266 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 ZNF138P52744 262 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 FLI1Q01543 452 aaPredicted RBP4.37□□□□□ -1.71
USP39-213ENST00000467885 KIR3DS1Q14943 382 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 TMEM241Q24JQ0 296 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 SOHLH1Q5JUK2 328 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 ACTL10Q5JWF8 245 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 EBLN2Q6P2I7 272 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 Q6ZQT7 251 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 TRPT1Q86TN4 253 aaKnown RBP4.37□□□□□ -1.71
USP39-213ENST00000467885 BAGE2Q86Y30 109 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 ZFAND2AQ8N6M9 145 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 TMEM75Q8N9X5 138 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 OR10J6PQ8NGY7 276 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 IGF2BP2-AS1Q96M15 143 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 KRTAP4-5Q9BYR2 181 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 WFDC10AQ9H1F0 79 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 PARLQ9H300 379 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 SDF2L1Q9HCN8 221 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 ZMAT5Q9UDW3 170 aaKnown RBP4.37□□□□□ -1.71
USP39-213ENST00000467885 ZFP30Q9Y2G7 519 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 HLA-DRB4X5D2U9 266 aa4.37□□□□□ -1.71
USP39-213ENST00000467885 TRBV7-9A0A0J9YWB2 115 aa4.36□□□□□ -1.71
USP39-213ENST00000467885 FBLL1A6NHQ2 334 aaKnown RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms