RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ZNF502Q8TBZ5 544 aa7.79□□□□□ -1.16
VPS53-202ENST00000389040 ZNF414Q96IQ9 312 aa7.79□□□□□ -1.16
VPS53-202ENST00000389040 RAX2Q96IS3 184 aa7.79□□□□□ -1.16
VPS53-202ENST00000389040 C17orf77Q96MU5 243 aa7.79□□□□□ -1.16
VPS53-202ENST00000389040 TRBV6-1A0A0K0K1D8 114 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 IGLV2-11P01706 119 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 GPR183P32249 361 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 PDE6HQ13956 83 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 GOLT1AQ6ZVE7 132 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 ZNF492Q9P255 531 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 RABAC1Q9UI14 185 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 TRAV8-1A0A0A6YYK1 113 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 MRPL54Q6P161 138 aaKnown RBP7.78□□□□□ -1.16
VPS53-202ENST00000389040 TMEM136Q6ZRR5 245 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 GPHB5Q86YW7 130 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 LINC00482Q8N8I6 264 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 TMEM75Q8N9X5 138 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 TSKUQ8WUA8 353 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 GSN-AS1Q9NRJ2 163 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 NAT8BQ9UHF3 227 aa7.78□□□□□ -1.16
VPS53-202ENST00000389040 GRIFINA4D1Z8 144 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 K7EQM0 130 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 BMPR1BO00238 502 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 IGHV3-11P01762 117 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 CLEC3BP05452 202 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 RPL7P18124 248 aaKnown RBP7.77□□□□□ -1.17
VPS53-202ENST00000389040 S100A7P31151 101 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 INSL3P51460 131 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 CT83Q5H943 113 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 PRNTQ86SH4 94 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 GBGT1Q8N5D6 347 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 NUP35Q8NFH5 326 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 TMEM18Q96B42 140 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 NEU1Q99519 415 aa7.77□□□□□ -1.17
VPS53-202ENST00000389040 RPP21Q9H633 154 aaKnown RBP7.77□□□□□ -1.17
VPS53-202ENST00000389040 ZMAT5Q9UDW3 170 aaKnown RBP7.77□□□□□ -1.17
VPS53-202ENST00000389040 C19orf71A6NCJ1 209 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 P01737 135 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 CRISP2P16562 243 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 CD33P20138 364 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 RAB4BP61018 213 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 RELQ04864 619 aaPredicted RBP7.76□□□□□ -1.17
VPS53-202ENST00000389040 KLF5Q13887 457 aaPredicted RBP7.76□□□□□ -1.17
VPS53-202ENST00000389040 FAM106AQ4KMX7 169 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 DNLZQ5SXM8 178 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 RASL11AQ6T310 242 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 LINC00322Q6ZN03 302 aaPredicted RBP7.76□□□□□ -1.17
VPS53-202ENST00000389040 C18orf65Q6ZTR6 163 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 TMEM256Q8N2U0 113 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 CCDC140Q96MF4 163 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 AAMDCQ9H7C9 122 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 ZNF331Q9NQX6 463 aaPredicted RBP7.76□□□□□ -1.17
VPS53-202ENST00000389040 IGHV4OR15-8A0A075B7B6 117 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 A0A087WW49 117 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 HIGD1CA8MV81 97 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 DIRC3C9JPN6 131 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 LGALS9O00182 355 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 HLA-DQA1P01909 254 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 HOXD3P31249 432 aaPredicted RBP7.76□□□□□ -1.17
VPS53-202ENST00000389040 ARL3P36405 182 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 PSG9Q00887 426 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 CDPF1Q6NVV7 123 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 TOMM20LQ6UXN7 152 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 DAZAP1Q96EP5 407 aaKnown RBP7.76□□□□□ -1.17
VPS53-202ENST00000389040 ZFAND3Q9H8U3 227 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 SIGLEC8Q9NYZ4 499 aa7.76□□□□□ -1.17
VPS53-202ENST00000389040 IGHV3-35A0A0C4DH35 117 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 M0R3E3 92 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 Q0VG73 95 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 PSG3Q16557 428 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 CLEC19AQ6UXS0 136 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 PEMTQ9UBM1 199 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 TP53TG3Q9ULZ0 132 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 PSG8Q9UQ74 426 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 ZFP30Q9Y2G7 519 aa7.75□□□□□ -1.17
VPS53-202ENST00000389040 IGHV3OR16-8A0A075B7F1 116 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 A8MWL6 223 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 NPIPB6E9PJ23 425 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 OVOL1O14753 267 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 WIPF1O43516 503 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 CSN1S1P47710 185 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 JOSD1Q15040 202 aaPredicted RBP7.74□□□□□ -1.17
VPS53-202ENST00000389040 DEFB136Q30KP8 78 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 REC114Q7Z4M0 266 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 ATP5L2Q7Z4Y8 100 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 GFRA4Q9GZZ7 299 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 SERTM2A0A1B0GWG4 89 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 NDUFA4O00483 81 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 NUPR1O60356 82 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 APCSP02743 223 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 BAGE3Q86Y29 109 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 OR4B1Q8NGF8 309 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 GTSF1Q8WW33 167 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 ZC2HC1AQ96GY0 325 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 SMAD5-AS1Q9Y6J3 95 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 DNHD1Q96M86 4753 aa7.74□□□□□ -1.17
VPS53-202ENST00000389040 A0A1B0GXF2 115 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 FAM231BA6NCW3 169 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 ZNF253O75346 499 aa7.73□□□□□ -1.17
VPS53-202ENST00000389040 ESDP10768 282 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 170.8 ms